Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2384 ATGGAGAGAGGTTGGAAGAATGGGAATTTAGGATATAGTTATAGATATGATGGGAAATTGAAGGGGTGTGGGTGGAGAATTCCAAAGCGTAATTTGATGATGAGCTCAGCTTCTGGTTTTGCGAACTCGCCGGAGACCATGGATGACGCCGGAAACATTCCAAACTCCGGCAACCCATCGCACAAGGCCATCGCCGTCACTGCCGGGGAAGCGCACACTCTCCTTCTTACTGGTAACACCGCTATATTCAAAGAGACCCTCAAATTTCTCTGTTTTTTTCTGTGTGTGAAAGAGGGAAATAATGTTCCAGTGTTGTTGGATGCAGGGGATGGGAGTGTGTACTCATGGGGAAGAGGAATGTTTGGGAGGCTTGGCCATGGTTCAGAAAAGGATGAGCTTTTACCAGTTCAGGTCAAGTTTCAGAACCCTAATGGAGGAGAAGCAGACACACCCAAAATTGTTGCTATTGCTTCTGGTGCATATCATAATCTTGCTCTTGCAGGTTCTGTAACAGTTATCTACATCCTTGACTACTGTATGGATGGTCAACTTGGCACGGACGGAGAGGATACACCTGATGAAAATTCTATTGGTGGAGTTTATAACCTAGCGCCCCACTTATTGAATAAGTTTCCCGAGTCGCACCCACTTGATTCTTCAACTGGTGTCTCTGAAGTAGAAGGAAAAGGATCAATTAAGATACATGCTGTCAAAGCAGGAGGAATGATGTCTATGGCTATTGATAATCGTGGCACCCTCTGGATGTGGGGAAACTGCCCACAAGAAAGCAAAGGTGAATTCTCTCTTGTAAGTAGTTTCATTCCAATGCCAATACTGGCCTTTCATGGCCTTAATGTTGCCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCATTGGTTAGTGCCGGAGAATCAAACAATGGTGAAGATTTGGTCTGCTACTCTTGGGGTTTTAACAACCATGGCCAGTTAGGATTGGGGGATAGGGAGAACAGGGCACATCCAGAAGTTGTGAAAACATTTGGTGAGGAGTCCCCTTGGACAATTTATGACATAGCATGTGGTGCTGCTCACACTGCCTTGCTCACTCGCAAAAAGAAATCTACCGAGTTGGAAAGCAAGTGCTGGACTTTTGGCCTTGGGGATAATGGCCAACTCGGGCATGGAACAACACAAAGCGCATTATTTCCTACACCTGTTCAAGACTTGCCGCAAGATATATCTCTTATTGGTATCGATTGCGGCTTGTTTCATACAAGTGTGGTTTCCTCATCAGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGCTGGTCGTGGTTCATCAGATTCTGGTGATGCCCTCTCACCCTTGCTTAAACCGTGTGCTCCATACCAACCTAAGTTTCCAGATCCGGTTCAAGTTGCATGTGGAGCTGCACATACTGTTATTGTTGCGCGGGATGGATATAAGGTGTGGTCTTGGGGTAGGGGGCGATGTGGAGTTCTTGGAACYGGTAACGAATTGGAYTGTTATACYCCCACCAAGGTGCGGTGGCCTCCAGCGACCGAAGATTCAGAGGAAGAGGAATCAAAGAGCTCCCTCGAGCAGGACAGAGAGAAAGAAAAGGAGGCCGAAGTAAAAACAGAAACAGATGAGAAATTATCCTCGGCACTGAATGAGCTGAAGCAGCTTCAATTGAAGCTATCCACAATGGAACAATATGCTAGCATACTTCATGGTTGTGTTTTCGGAAAACCTTTTGCTGAGCAAGATGTCCCTGCTTCATTGAAGGATTCAGGTTCATTCAACATTGCAAAAGAATGGGAGAACATGTTGGAGACTGCAGATCATAGGACGCTAATGAGGTTGGAAATGTTCTACCGGGACATGCTTGCTGGTGTGAAAGATAAACAAATGAAGAGGAGGATCAAGGAAATTGTAAAGGAGTGCCTCCAATCACCGGAGCGGAAAAATTAG 1977 0.4598 MERGWKNGNLGYSYRYDGKLKGCGWRIPKRNLMMSSASGFANSPETMDDAGNIPNSGNPSHKAIAVTAGEAHTLLLTGNTAIFKETLKFLCFFLCVKEGNNVPVLLDAGDGSVYSWGRGMFGRLGHGSEKDELLPVQVKFQNPNGGEADTPKIVAIASGAYHNLALAGSVTVIYILDYCMDGQLGTDGEDTPDENSIGGVYNLAPHLLNKFPESHPLDSSTGVSEVEGKGSIKIHAVKAGGMMSMAIDNRGTLWMWGNCPQESKGEFSLVSSFIPMPILAFHGLNVAKVACGNEHVVALVSAGESNNGEDLVCYSWGFNNHGQLGLGDRENRAHPEVVKTFGEESPWTIYDIACGAAHTALLTRKKKSTELESKCWTFGLGDNGQLGHGTTQSALFPTPVQDLPQDISLIGIDCGLFHTSVVSSSGDVWSWGMEKGLGLCPDAGRGSSDSGDALSPLLKPCAPYQPKFPDPVQVACGAAHTVIVARDGYKVWSWGRGRCGVLGTGNELDCYTPTKVRWPPATEDSEEEESKSSLEQDREKEKEAEVKTETDEKLSSALNELKQLQLKLSTMEQYASILHGCVFGKPFAEQDVPASLKDSGSFNIAKEWENMLETADHRTLMRLEMFYRDMLAGVKDKQMKRRIKEIVKECLQSPERKN* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2384 658 Coils Coil 547 574 - -
Amo10g2384 658 PRINTS Chromosome condensation regulator RCC1 signature 289 305 IPR000408 -
Amo10g2384 658 PRINTS Chromosome condensation regulator RCC1 signature 112 128 IPR000408 -
Amo10g2384 658 PRINTS Chromosome condensation regulator RCC1 signature 484 505 IPR000408 -
Amo10g2384 658 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Amo10g2384 658 Gene3D - 15 304 IPR009091 -
Amo10g2384 658 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 251 302 IPR000408 -
Amo10g2384 658 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 373 425 IPR000408 -
Amo10g2384 658 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 104 656 - -
Amo10g2384 658 SUPERFAMILY RCC1/BLIP-II 15 132 IPR009091 -
Amo10g2384 658 MobiDBLite consensus disorder prediction 513 551 - -
Amo10g2384 658 SUPERFAMILY RCC1/BLIP-II 227 519 IPR009091 -
Amo10g2384 658 Pfam Regulator of chromosome condensation (RCC1) repeat 491 520 IPR000408 -
Amo10g2384 658 Pfam Regulator of chromosome condensation (RCC1) repeat 375 421 IPR000408 -
Amo10g2384 658 Pfam Regulator of chromosome condensation (RCC1) repeat 110 166 IPR000408 -
Amo10g2384 658 Pfam Regulator of chromosome condensation (RCC1) repeat 314 362 IPR000408 -
Amo10g2384 658 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 111 169 IPR000408 -
Amo10g2384 658 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 311 365 IPR000408 -
Amo10g2384 658 MobiDBLite consensus disorder prediction 520 551 - -
Amo10g2384 658 Gene3D - 305 565 IPR009091 -
Amo10g2384 658 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 426 487 IPR000408 -
Amo10g2384 658 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 104 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2384 Amo-Chr10 83029007 83033690 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2384 - - gmx:100815199 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2384 10 83029007 83033690 Amo20g2860 20 129357873 129361052 hybridization