Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2859 ATGGAATCCGTTGCTTCTAATTCTGATAATAATAATTCTTCTTCGTCATCCTCGTCATCTTCGTCGCAGCAGAATCATCACCACCACCACCCCCGGTTCAAGCCGAGCCAACCAATCTCAGACCGGATAGTCCGTGCCCTGAGGCACCGCCTCCTCCTCCTCCACCGCTCCACCACCACCTTCTTCGTCTTTGGCGCCACCGGGAACGTCTACACGGTGAACCTCTCGTCCACACCATCATGCACGTGCCCGGACCGAACCACCCCATGCAAGCACATCCTCTTCGTCCTCATCCGTGTCCTGGGCGTGCCCCTCGACGACGCCTGCCTAAGGCGGAGGACCCTCCGACCCTGCCAGGTCCAGCGCCTGATGGCGGCACCCACGCTCCCCGAGGCAGTGGCGGGGGACGCGCTGAAGCAGAGGTTCCGGCAGGTGTTCTTGGAGGGAGGAGGATCGTCATTATCGTCGTCGTCGATCGAGACGGAGGAGGGTGCCACGTGTCCCGTGTGCATGGAAGAGATGGGGAAGGAAGAGAAGCTTGTGGCATGTGGGACATGCAGGAACCCTATCCATGAAGAGTGCCTTATGAGGTGGAAGAGGAGCAGTGGGAGGAGATCGGCGAGTTGCGTGATATGCAGGGCACGGTGGCGGAATAGGGCGGAACAGGATAAGTATGTTAACCTCTCCGCGTATGTTAGCGAGGATGATGATGTCATGCCACCCCCTTCTTCGTCTCTCTGCACTGATCATCCCTAG 756 0.5873 MESVASNSDNNNSSSSSSSSSSQQNHHHHHPRFKPSQPISDRIVRALRHRLLLLHRSTTTFFVFGATGNVYTVNLSSTPSCTCPDRTTPCKHILFVLIRVLGVPLDDACLRRRTLRPCQVQRLMAAPTLPEAVAGDALKQRFRQVFLEGGGSSLSSSSIETEEGATCPVCMEEMGKEEKLVACGTCRNPIHEECLMRWKRSSGRRSASCVICRARWRNRAEQDKYVNLSAYVSEDDDVMPPPSSSLCTDHP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2859 251 MobiDBLite consensus disorder prediction 1 24 - -
Amo20g2859 251 Pfam SWIM zinc finger 71 99 IPR007527 GO:0008270
Amo20g2859 251 ProSiteProfiles Zinc finger SWIM-type profile. 71 101 IPR007527 GO:0008270
Amo20g2859 251 ProSiteProfiles Zinc finger RING-CH-type profile. 159 219 IPR011016 GO:0008270
Amo20g2859 251 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 15 239 IPR039903 GO:0061630
Amo20g2859 251 SUPERFAMILY RING/U-box 158 219 - -
Amo20g2859 251 Pfam Ring finger domain 166 213 IPR001841 -
Amo20g2859 251 ProSiteProfiles Zinc finger RING-type profile. 167 213 IPR001841 -
Amo20g2859 251 PANTHER - 15 239 - -
Amo20g2859 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 230 IPR013083 -
Amo20g2859 251 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2859 Amo-Chr20 129354889 129356070 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2859 - - adu:107470742 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2859 20 129354889 129356070 Amo20g2859 20 129354889 129356070 ECH
Amo10g2383 10 83028238 83029002 Amo20g2859 20 129354889 129356070 hybridization