Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2383 ATGGATTCCGTTGCTTCTAATTCTGATAATAATAATAATAATAATTCTTCTTCGTCATCATCGTCGTCTTCGTCGCAGCAGAATCATCACCACCACCACCCCCGGTTCAAGCCGAGCCAACCAATCTCGGACCGGATAGTCCGTGCCCTGAGGCACCGCCTCCTCCTCCTCCACCGCTCCACCACCACCTTCTTCGTCTTGGGCGCCACCGCGAACGTCTACACGGTGAACCTCTCGTCCACACCATCATGCACGTGCCCGGACCGAACCACCCCATGCAAGCACATCCTCTTCGTCCTCATCCGTGTCCTGGGCGTGCCCCTCGACGACGCCTGCCTAAGGCGGAGGACCCTCCGACCCTGCCAGGTCCAGCGCCTGATGGCGGCACCCACGCTCCCCGAGGCAGTGGCGGGAGACGCGCTGAAGCAGAGGTTCCGGCAGGTGTTCTTGGAGGGAGGAGGATCGTCGTTATCGTCGTCGTCGATCGAGACGGAGGAGGGTGCCACGTGTCCCGTGTGCATGGAAGAGATGGGGAAGGAAGAGAAGCTTGTGGCATGTGGGACATGCAGGAACCCTATCCATGAAGAGTGCCTTATGAGGTGGAAGAGGAGCAATGGGAGGAGATCGGCGAGTTGCGTGATATGCAGGGCACGGTGGCGGAATAGGGCGGAACAGGATAAGTATGTTAACCTCTCCGCGTATGTTAGCGAGGATGATGATGTCATGCCACCCCCTTCTTCGTCTCTCTGCACTGATCATCCCTAG 765 0.5817 MDSVASNSDNNNNNNSSSSSSSSSSQQNHHHHHPRFKPSQPISDRIVRALRHRLLLLHRSTTTFFVLGATANVYTVNLSSTPSCTCPDRTTPCKHILFVLIRVLGVPLDDACLRRRTLRPCQVQRLMAAPTLPEAVAGDALKQRFRQVFLEGGGSSLSSSSIETEEGATCPVCMEEMGKEEKLVACGTCRNPIHEECLMRWKRSNGRRSASCVICRARWRNRAEQDKYVNLSAYVSEDDDVMPPPSSSLCTDHP* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2383 254 Pfam Ring finger domain 169 216 IPR001841 -
Amo10g2383 254 ProSiteProfiles Zinc finger SWIM-type profile. 74 104 IPR007527 GO:0008270
Amo10g2383 254 Pfam SWIM zinc finger 74 102 IPR007527 GO:0008270
Amo10g2383 254 SUPERFAMILY RING/U-box 161 222 - -
Amo10g2383 254 MobiDBLite consensus disorder prediction 1 42 - -
Amo10g2383 254 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 18 242 IPR039903 GO:0061630
Amo10g2383 254 MobiDBLite consensus disorder prediction 1 27 - -
Amo10g2383 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 233 IPR013083 -
Amo10g2383 254 ProSiteProfiles Zinc finger RING-type profile. 170 216 IPR001841 -
Amo10g2383 254 ProSiteProfiles Zinc finger RING-CH-type profile. 162 222 IPR011016 GO:0008270
Amo10g2383 254 PANTHER - 18 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2383 Amo-Chr10 83028238 83029002 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2383 - - adu:107470742 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2383 10 83028238 83029002 Amo20g2859 20 129354889 129356070 hybridization