Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2767 ATGATGCGATCCACTTCCATTCTCTTGCTCTCCAAACCTTCCCTTTTCCCTTCTTCCTTCTCATTTCCCACCACCTCCCTGTCTCAATGGTTTTCCCTTCTCCGCCACGCCATCGCCACCTCCGACCTCCTCCTCGGAAAACGTGGCCACGCCCTCATCATAACCTCCGGCCACCACCATGACCCTTTCCTTGTCAACAACCTCATCACCATGTACGGCAAATGCGGCTCCCTCTCCTGCGCTCGCCACCTGTTCGACGTAATTCCCCACAGAGACCTTGTCACCTGGAATGCCATTCTCTCTGCATACGCCCAAGCCGGTGATGCTGACATTGTCAATGCTCATGAGGGTTTTCGCCTTTTCCGTGTTCTCCGCGAGTCCTTTGTGTTAACCACTCGTCATACTCTGGCCCCTGTGTTCAAGTTATGCCTCCTTTCTGGGTGTGAATGGGCTTCTCAGGTGCTTCATGGCTATGCGGTTAAGATTGAGTTGGAATGGGATGTGTTTGTGGCTGGGGCATTGGTCAATATATATGCTAAATTTGGGAGGATCAGAGATGCCCGTGTTCTGTTTGATGGGATGCCCGTGAGGGATGTGGTCTTGTGGAACGTCATGATCAAGGCTTATGTTGAAATGGGTCTTCAGCATGAAGCTTTGTTTCTCTTCTCGGCGTTTCACAGGAGTGGCCTGTGTCCTGATGATGTTACTGTCCGGAGTGTTCTTATGGGTGTTAGTAGAACTGGTTTTGAATTGCAGTTGAAGCAGGTTCGAGCTTATGCTACAAAGTTGTTCCTTCTGGATCATGATTGGGAGGTTGTCATATGGAACAAGACACTTAGTGACTATCTTCAAGCTGGAGAGACTACGGAGGCTATTGAATGCTTCATGGATATGATCAAATTGCGGGTAGCATATGACAACATGACATTACTCGTGATGCTATCTGTGGTTGCAAGTGAAAAGAATATCAATATGGGAAAACAGATTCACGGTGTTGTTGTGAAAATGGAGTCTGATCGTGTTGTATCAGTTGCAAACAGTCTTCTTAATATGTACATGAAGGCAGCTTTAATTGATGCCTATTCCAAGAGTGGAAAGATGGAAGAGGCAGAACTTCTTTTTAGAATCCATGATGGATTTGATTTGGCTTCTTGGAACGCTATGATGCATGGGTACATAGTGAGTAAGTGCTATCACAAAGCATTGGAGCTTTTCATTCAAATGCATGGAAGTGGTGAGCAGGGAGATCAGATTACTCTGGCAAATGCAGCTAAAGCCGCTGGATGCTTGGTGGGGCTTGAACAAGGGAAGCAGCTTCACGCCATTGCCATAAAAAGGATATTTAATTTAGATTTGTTTGTTATAAGCGGGATTCTGGACATGTATCTAAAATGTGGAGAGATGGAAAGCGCATGCAAAGTTTTCAGTAAGATCCCTTCACCTGATGATGTTGCATGGACAACTATGATATCGGGATGCGTGGATAATGGATATGAGGAGCATGCTCTTTTTACATATCATCAGATGAGACTTGCCGGTGTGCAACCTGACGAGTATACCTTTGCCACCCTTGTCAAGGCTAGCTCTCTTCTAACAGCATTGGAACAAGGGAGGCAGATTCATGCTAATGTTATCAAGTTGAACTGTGCTTTAGATCCTTTTGTTATGACCTCACTTGTTGACATGTATGCCAAGTGTGGGAACATAGAAGATGCCTATAGATTGTTCAAAAAAATGAACATGAAGAGCATCGCCTCGTGGAATGCTATGATAGTTGGATTAGCTCAACACGGAAATGCAAAGGAGGCCCTCAACCTTTTCAAAGATATGAAGTCTAAGGATGAAATGCCTGACAGAGTTACCTTTATAGGAGTCCTTTCTGCTTGTAGCCATTCTGGTTTGGTTTCTGAAGCATATGAAAATTTCTATTCTATGCAAAGAGACCACAGAATTGAACCCGAGATTGAGCATTATTCCTGTCTTGTTGATGCCCTTAGCCGTGCAGGGCGCATTAAGGAAGCTGAAAAGGTTATATCATCGATGCCCTTTGAAGCTTCTGCTTCAATGTACAGGACTCTCCTAAATGCTTGTAGGGTTCAGGGAGACAAGGTGAAGGGAAAACATGTTGCCGAGACGCTTTTGACCTTGGAGCCGTCTGATTCAGCAGCTTATGTTCTTTTATCCAATATATATAGAGCTGCTAATCAATGGGAAAGTGCAGTGAGTGCTAGAAATATGATGAGAAGGGTAAATGTAAAGAAGGATCCAGGCTTTAGTTGGATAGATATAAAGAACAAGGTTCATTTGTTTGTAGCAGGAGATAGATCACATGAAGAAGCTGATTTGATATACAATAAGGTGGATCATATTATGAAAAGGATTAAGGAAGAAGGATATGTCCCTGATACAGATTTTGCACTTGTTGATATTGAAGAAGAAGAAAAGGAGAGTGCTCTTTATTATCACAGTGAGAAGCTAGCAATAGCTTATGGTATCGTAAGAACACCACCATCCATCCCATTAAGGGTAATTAAGAACCTTAGGGTGTTTATCTATAAAATTAAATGCAACTCGAAAATTCTAATTTCTTTTAAGAGTTTAATCGATACACTGATAATGTAA 2622 0.4321 MMRSTSILLLSKPSLFPSSFSFPTTSLSQWFSLLRHAIATSDLLLGKRGHALIITSGHHHDPFLVNNLITMYGKCGSLSCARHLFDVIPHRDLVTWNAILSAYAQAGDADIVNAHEGFRLFRVLRESFVLTTRHTLAPVFKLCLLSGCEWASQVLHGYAVKIELEWDVFVAGALVNIYAKFGRIRDARVLFDGMPVRDVVLWNVMIKAYVEMGLQHEALFLFSAFHRSGLCPDDVTVRSVLMGVSRTGFELQLKQVRAYATKLFLLDHDWEVVIWNKTLSDYLQAGETTEAIECFMDMIKLRVAYDNMTLLVMLSVVASEKNINMGKQIHGVVVKMESDRVVSVANSLLNMYMKAALIDAYSKSGKMEEAELLFRIHDGFDLASWNAMMHGYIVSKCYHKALELFIQMHGSGEQGDQITLANAAKAAGCLVGLEQGKQLHAIAIKRIFNLDLFVISGILDMYLKCGEMESACKVFSKIPSPDDVAWTTMISGCVDNGYEEHALFTYHQMRLAGVQPDEYTFATLVKASSLLTALEQGRQIHANVIKLNCALDPFVMTSLVDMYAKCGNIEDAYRLFKKMNMKSIASWNAMIVGLAQHGNAKEALNLFKDMKSKDEMPDRVTFIGVLSACSHSGLVSEAYENFYSMQRDHRIEPEIEHYSCLVDALSRAGRIKEAEKVISSMPFEASASMYRTLLNACRVQGDKVKGKHVAETLLTLEPSDSAAYVLLSNIYRAANQWESAVSARNMMRRVNVKKDPGFSWIDIKNKVHLFVAGDRSHEEADLIYNKVDHIMKRIKEEGYVPDTDFALVDIEEEEKESALYYHSEKLAIAYGIVRTPPSIPLRVIKNLRVFIYKIKCNSKILISFKSLIDTLIM* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2767 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 45 248 - -
Amo20g2767 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 355 850 - -
Amo20g2767 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 227 353 - -
Amo20g2767 873 Pfam PPR repeat family 481 527 IPR002885 -
Amo20g2767 873 Pfam PPR repeat family 583 630 IPR002885 -
Amo20g2767 873 Gene3D Tetratricopeptide repeat domain 529 609 IPR011990 GO:0005515
Amo20g2767 873 Gene3D Tetratricopeptide repeat domain 153 265 IPR011990 GO:0005515
Amo20g2767 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Amo20g2767 873 Pfam E motif 705 762 IPR046848 -
Amo20g2767 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Amo20g2767 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 582 IPR002885 -
Amo20g2767 873 Pfam DYW family of nucleic acid deaminases 798 850 IPR032867 GO:0008270
Amo20g2767 873 SUPERFAMILY TPR-like 282 742 IPR011990 GO:0005515
Amo20g2767 873 TIGRFAM PPR: pentatricopeptide repeat domain 658 681 IPR002885 -
Amo20g2767 873 TIGRFAM PPR: pentatricopeptide repeat domain 484 518 IPR002885 -
Amo20g2767 873 TIGRFAM PPR: pentatricopeptide repeat domain 384 414 IPR002885 -
Amo20g2767 873 TIGRFAM PPR: pentatricopeptide repeat domain 557 579 IPR002885 -
Amo20g2767 873 TIGRFAM PPR: pentatricopeptide repeat domain 586 618 IPR002885 -
Amo20g2767 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Amo20g2767 873 PANTHER - 355 850 - -
Amo20g2767 873 Gene3D Tetratricopeptide repeat domain 273 426 IPR011990 GO:0005515
Amo20g2767 873 Gene3D Tetratricopeptide repeat domain 24 152 IPR011990 GO:0005515
Amo20g2767 873 Gene3D Tetratricopeptide repeat domain 610 778 IPR011990 GO:0005515
Amo20g2767 873 Gene3D Tetratricopeptide repeat domain 427 528 IPR011990 GO:0005515
Amo20g2767 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Amo20g2767 873 Pfam PPR repeat 94 110 IPR002885 -
Amo20g2767 873 Pfam PPR repeat 556 582 IPR002885 -
Amo20g2767 873 Pfam PPR repeat 356 375 IPR002885 -
Amo20g2767 873 Pfam PPR repeat 200 229 IPR002885 -
Amo20g2767 873 Pfam PPR repeat 173 197 IPR002885 -
Amo20g2767 873 Pfam PPR repeat 657 681 IPR002885 -
Amo20g2767 873 Pfam PPR repeat 384 412 IPR002885 -
Amo20g2767 873 Pfam PPR repeat 273 302 IPR002885 -
Amo20g2767 873 PANTHER - 227 353 - -
Amo20g2767 873 PANTHER - 45 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2767 Amo-Chr20 126403339 126406625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2767 135 849 Glycoside Hydrolase AT3G49170 33.024 1.59e-132 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2767 - - gmx:102666538 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2767 20 126403339 126406625 Amo20g2767 20 126403339 126406625 ECH
Amo10g2321 10 81185004 81188290 Amo20g2767 20 126403339 126406625 hybridization