Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2321 ATGATGCGATCCACTTCCATTCTCTTGCTCTCCAGACCTTCCCTTTTCCCTTCTTCCTTCTCATTTTCCACCACCTCCCTGTCTCAATGGTTTTCCTTTCTCCGCCACGCCATCGCCACCTCCGACCTCCTCCTCGGAAAACGTGGCCACGCCCTCATCATAACCTCCGGCCACCACCATGACCCTTTCCTCGTCAACAACCTCATCACCATGTACGGCAAATGCGGCTCCCTCTCCTGCGCTCGCCACCTGTTCGACGTAATTCCCCACAGAGACCTTGTCACCTGGAATGCCATTCTCTCTGCATACGCCCAAGCCGGTGATGCTGACATTGTCAACGCTCATGAGGGTTTTCGCCTTTTCCGTGTTCTCCGCGAGTCCTTTGTGTTAACCACTCGTCATACTCTGGCCCCTGTGTTCAAGTTATGCCTCCTTTCTGGGTGTGAATGGGCTTCTCAGGTGCTTCATGGCTATGCGGTTAAGATTGGATTGGAATGGGATGTGTTTGTGGCTGGGGCATTGGTCAATATATATGCTAAATTTGGGAGGATCAGAGATGCCCGTGTTCTGTTTGAAGGGATGCCCGTGAGGGATGTGGTCTTGTGGAACGTCATGATCAAGGCTTATGTTGAAATGGGTCTTCAGGATGAAGCTTTGTTTCTCTTCTCGGCGTTTCACAGGAGTGGCCTGTGTCCTGATGATGTTACTGTCCGGAGTGTTCTTATGGGTGTTAGTAGAACTGGTTTTGAATTGCAGTTGAAGCAGGTTCGAGCTTATGCTACAAAGTTGTTCCTTCTGGATCATGATTGGGAGGTTGTCATATGGAATAAGACACTTAGTGACTATCTTCAAGCTGGAGAGACTACGGAGGCTATTGAATGCTTCATGGATATGATCAAACTGCGGGTAGCATATGACAACATGACATTACTCGTGATGCTATCTGTGGTTGCAAGTGAAAAGAATATCAATATGGGAAAACAGATTCACTGTGTTGTTGTGAAAATGGAGTCTGATCGTGTTGTATCAGTTGCAAACAGTCTTCTTAATATGTACATGAAGGCAGCTTTAATTGATGCCTATTCCAAGAGTGGAAAGATGGAAGAGGCAGAACTTCTTTTTAGAATCCATGATGGATTTGATTTGGCTTCTTGGAACGCTATGATGCATGGGTACATAGTGAGTAAGTGCTATCACAAAGCATTGGAGCTTTTCATTCAAATGCTTGGAAGTGGTGAGCAGGGAGATCAGATTACTCTGGCAAATGCAGCTAAAGCTGCTGGATGCTTGGTGGGGCTTGAACAAGGGAAGCAGCTTCACGCCATTGCCATAAAAAGGATATTTAATTTAGATTTGTTTGTTATAAGCGGGATTCTGGACATGTATCTAAAATGTGGAGAGATGCAAAGCGCATGCAAAGTTTTCAGTAAGATCCCTTCACCTGATGATGTTGCATGGACAACTATGATATCAGGATGCGTGGATAATGGATATGAGGAGCATGCTCTTTTTACATATCATCAGATGAGACTTGCCGGTGTGCAACCTGACGAGTATACCTTTGCCACCCTTGTCAAGGCTAGCTCTCTTCTAACAGCATTGGAACAAGGGAGACAGATTCATGCTAATGTTATCAAGTTGAACTGTGCTTTAGATCCTTTTGTTATGACCTCGCTTGTTGACATGTATGCCAAGTGTGGGAACATAGAAGATGCCTATAGATTGTTCAAAAAAATGAACATGAAGAGCATCGCCTCGTGGAATGCTATGATAGTTGGATTAGCTCAACACGGAAATGCAAAGGAGGCCCTCAACCTTTTCAAAGATATGAAGTCTAAGGATGAAATGCCTGACAGAGTTACCTTTATAGGAGTCCTTTCTGCTTGTAGCCATTCTGGTTTGGTTTCTGAAGCATATGAAAATTTCTATTCTATGCAAAGAGACCACAGAATTGAACCCGAGATTGAGCATTATTCCTGTCTTGTTGATGCCCTTAGCCGTGCAGGGCGCATACAGGAAGCTGAAAAGGTTATATCATCGATGCCCTTTGAAGCTTCTGCTTCAATGTACAGGACTCTCCTAAATGCTTGTAGGGTTCAAGGAGACAAGGTGAAGGGAAAACATGTTGCCGAGACGCTTTTGACCTTGGAGCCGTCTGATTCAGCAGCTTATGTTCTTTTATCCAATATATATAGAGCTGCTAATCAATGGGAAAGTGCAGTGAGTGCTAGAAATATGATGAGAAGGGTAAATGTAAAGAAGGATCCAGGCTTTAGTTGGATAGATATAAAGAACAAGGTTCATTTGTTTGTAGCAGGAGATAGATCACATGAAGAAGCTGATTTGATATACAATAAGGTGGATCATATTATGAAAAGGATTAAGGAAGAAGGATATGTCCCTGATACAGATTTTGCACTTGTTGATATTGAAGAAGAAGAAAAGGAGAGTGCTCTTTATTATCACAGTGAGAAGCTAGCAATAGCTTATGGTATCGTAAGAACACCACCATCCATCCCATTAAGGGTAATTAAGAACCTTAGGGTGTTTATCTATAAAATTAAATGCAACTCGAAAATTCTAATTTCTTTTAAGAGTTTAATTGATACACCCATAATGTAA 2622 0.4314 MMRSTSILLLSRPSLFPSSFSFSTTSLSQWFSFLRHAIATSDLLLGKRGHALIITSGHHHDPFLVNNLITMYGKCGSLSCARHLFDVIPHRDLVTWNAILSAYAQAGDADIVNAHEGFRLFRVLRESFVLTTRHTLAPVFKLCLLSGCEWASQVLHGYAVKIGLEWDVFVAGALVNIYAKFGRIRDARVLFEGMPVRDVVLWNVMIKAYVEMGLQDEALFLFSAFHRSGLCPDDVTVRSVLMGVSRTGFELQLKQVRAYATKLFLLDHDWEVVIWNKTLSDYLQAGETTEAIECFMDMIKLRVAYDNMTLLVMLSVVASEKNINMGKQIHCVVVKMESDRVVSVANSLLNMYMKAALIDAYSKSGKMEEAELLFRIHDGFDLASWNAMMHGYIVSKCYHKALELFIQMLGSGEQGDQITLANAAKAAGCLVGLEQGKQLHAIAIKRIFNLDLFVISGILDMYLKCGEMQSACKVFSKIPSPDDVAWTTMISGCVDNGYEEHALFTYHQMRLAGVQPDEYTFATLVKASSLLTALEQGRQIHANVIKLNCALDPFVMTSLVDMYAKCGNIEDAYRLFKKMNMKSIASWNAMIVGLAQHGNAKEALNLFKDMKSKDEMPDRVTFIGVLSACSHSGLVSEAYENFYSMQRDHRIEPEIEHYSCLVDALSRAGRIQEAEKVISSMPFEASASMYRTLLNACRVQGDKVKGKHVAETLLTLEPSDSAAYVLLSNIYRAANQWESAVSARNMMRRVNVKKDPGFSWIDIKNKVHLFVAGDRSHEEADLIYNKVDHIMKRIKEEGYVPDTDFALVDIEEEEKESALYYHSEKLAIAYGIVRTPPSIPLRVIKNLRVFIYKIKCNSKILISFKSLIDTPIM* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2321 873 Pfam PPR repeat family 481 527 IPR002885 -
Amo10g2321 873 Pfam PPR repeat family 583 630 IPR002885 -
Amo10g2321 873 Gene3D Tetratricopeptide repeat domain 533 646 IPR011990 GO:0005515
Amo10g2321 873 Gene3D Tetratricopeptide repeat domain 647 818 IPR011990 GO:0005515
Amo10g2321 873 Gene3D Tetratricopeptide repeat domain 151 265 IPR011990 GO:0005515
Amo10g2321 873 SUPERFAMILY TPR-like 204 742 IPR011990 GO:0005515
Amo10g2321 873 Pfam DYW family of nucleic acid deaminases 798 850 IPR032867 GO:0008270
Amo10g2321 873 Pfam PPR repeat 657 681 IPR002885 -
Amo10g2321 873 Pfam PPR repeat 94 110 IPR002885 -
Amo10g2321 873 Pfam PPR repeat 173 197 IPR002885 -
Amo10g2321 873 Pfam PPR repeat 384 412 IPR002885 -
Amo10g2321 873 Pfam PPR repeat 200 229 IPR002885 -
Amo10g2321 873 Pfam PPR repeat 356 375 IPR002885 -
Amo10g2321 873 Pfam PPR repeat 556 582 IPR002885 -
Amo10g2321 873 Pfam PPR repeat 273 302 IPR002885 -
Amo10g2321 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 582 IPR002885 -
Amo10g2321 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Amo10g2321 873 TIGRFAM PPR: pentatricopeptide repeat domain 384 413 IPR002885 -
Amo10g2321 873 TIGRFAM PPR: pentatricopeptide repeat domain 484 518 IPR002885 -
Amo10g2321 873 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Amo10g2321 873 TIGRFAM PPR: pentatricopeptide repeat domain 557 579 IPR002885 -
Amo10g2321 873 TIGRFAM PPR: pentatricopeptide repeat domain 658 681 IPR002885 -
Amo10g2321 873 TIGRFAM PPR: pentatricopeptide repeat domain 586 618 IPR002885 -
Amo10g2321 873 Gene3D Tetratricopeptide repeat domain 272 430 IPR011990 GO:0005515
Amo10g2321 873 Gene3D Tetratricopeptide repeat domain 433 532 IPR011990 GO:0005515
Amo10g2321 873 Gene3D Tetratricopeptide repeat domain 28 150 IPR011990 GO:0005515
Amo10g2321 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Amo10g2321 873 PANTHER - 226 353 - -
Amo10g2321 873 Pfam E motif 705 762 IPR046848 -
Amo10g2321 873 PANTHER - 45 248 - -
Amo10g2321 873 PANTHER - 353 850 - -
Amo10g2321 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 45 248 - -
Amo10g2321 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Amo10g2321 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Amo10g2321 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 226 353 - -
Amo10g2321 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 353 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2321 Amo-Chr10 81185004 81188290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2321 135 849 Glycoside Hydrolase AT3G49170 33.289 1.11e-132 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2321 - - gmx:102666538 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2321 10 81185004 81188290 Amo20g2767 20 126403339 126406625 hybridization