Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2752 ATGATGATGAGTCGCAGCCACTGCCACACTGAAGCTCAGTTCTCTTTTCCCGAACACGACTATGACGACGATGATTTCCACCTCCCTCTTACGCAGACCACACTTGCCCCTTCCAATCCTCACCGTCCATCCAAGAAYCTCAAGCACAAGTCAACGACCACACATCACTTCGGCAAGGAGAACGTTCCCCCTTACGACACTGACTTTAATATTGAAAACTGCAGCTTGGATTGCATCCCTTCCACCATAGATTGTGCCACCGTTTGTCATTCCCAACAGCAAAACGACGTCGTTCCTTCGTGCTCCGCGGAGTCCCAGGGCCTGAAGGAGAAAACCAACTGCGCGTACTTTCAAAATTCGATAGAGTCCAAGCTGGTGGCGTTGGGACCACACGCGCGGCTCAGCCACGGATCTGGAAAACCTTTGGATGATGATGATGATGATTCGAACCTCGATCTGTTGCTGAATTTGTGCAATGAGTTAGATGAAGATGAAAGATCTAGGATGATGCCGCGTGTTGATGGCGTTGGAGGTTCTGTTCTTTGTCCACTGTGTGATGTTGATATCTCTAGCTTCAGTGAGGAAGAGCGACACCGTCACACCAATCATTGCCTTGACAGAGTGGAAGATCAAACTCAAGATGTTGCAGTGCGTGATGGCGAAAATGATGGAGTGGGTGCTCAATTGGAGCCAGAGCCGAAGCCGAAAGTTGCCAATGTTTCTGCGGTTGTTGATTGGCTTCGCAGTATCGGCTTAGCGAAATACGAGGATATTTTTGTGAGAGAAGAAGTTGATTGGGACACCTTGCAGTGGCTGAAAGAAGAGGATCTATTAAGCATTGGTATTACTGCACTTGGTCCCAGAAAAAAGATTGTGCATGCTCTTTATGAACTTAGAAAAGGAACTGGCCWTTCAGATGAGAAACATGAGGATGCTATTGCAGAGCCTAGAAGGAGTGGAAACCAGAAAGTCAAATTGCAACGTGAAAAATCTGAAAAGAAAGTTMATGGCACAACTAAACCAGTGACAAACAAATTGATTACTGAATATTTTCCTGGCTCTGCTGGCAATGGGAAGAAAGCACCTGCGGCTTCAGGAGAACAGCSGGAAACAAAAAACAGTACCTTGGATTCTGGCCATAAAAGCAAGGCAAAAAATACGTCTACAAATAGAAAACTTCGTGATGTTCCCCAATGGTGTAGCATTCCTGGAACGCCTTTTCGGGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTCACACACTTCCATTTAGACCATTATCAAGGTCTCACAAAGTCGTTCAGTCATGGAAAGATCTATTGCTCTTCTATTACTGCTAGCCTTGTAAATATAAACATTGGGATTGCCTATGATAAAATACATGTTTTGCCTCTGAACGAGAAGGTCTCAATAGATGGTGTTGATGTGACCTGCTTGGATGCCAACCATTGTCCGGGTTCGATAATCATCCTCTTTCAACCTCCGAATGGTAAGGCGGTTCTCCATACTGGGGATTTTCGGTACAGTGAAGAAATAGCAAACAATCCTTTTCTCCGGATGTGTCGTATCCGTACTCTAATTCTTGATACAACATATTGTAACCCACAGTATGACTTTCCAAAACAAGAAGCTGTCATACAATTTGTTATTGATGCCATTCAAGCGGAGGCTTTTAATCCCWAGACCCTTTTTCTGATTGGCAGCTATACTATTGGAAAAGAAAGGTTATTCTTGGAGGTTGCTCGCACACTTRGTAAGAAGGTTTACGTGACAGCGGCAAAGTTGCGTCTTCTAAAATGTTTGGGATTTAGGGAGGATGATATGCAGTGGTTTACATTAAATGAGCACGAAAGCAACATTCACGTTGCTCCTATGTGGACACTTGCAAGTTTCAAAAGATTGAAACACATATCAAGTCAATATGCGGGTCGGTTCAGTCTTATAGTTGCTTTCTCTCCCACTGGTTGGACATTTGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGGTGGCAGCAGGGTACTATTATAAGGTATGAAGTGCCATACAGTGAGCATTGCAGCTATGCAGAACTCAAAGAGTTTGTGAAACTTATATCCCCCGATAACATTATACCAAGTGTTAATAACAACGGACCAGAATCCGTCGATGCTATGATTTCTCTCATGTTGTCTTGA 2190 0.4397 MMMSRSHCHTEAQFSFPEHDYDDDDFHLPLTQTTLAPSNPHRPSKNLKHKSTTTHHFGKENVPPYDTDFNIENCSLDCIPSTIDCATVCHSQQQNDVVPSCSAESQGLKEKTNCAYFQNSIESKLVALGPHARLSHGSGKPLDDDDDDSNLDLLLNLCNELDEDERSRMMPRVDGVGGSVLCPLCDVDISSFSEEERHRHTNHCLDRVEDQTQDVAVRDGENDGVGAQLEPEPKPKVANVSAVVDWLRSIGLAKYEDIFVREEVDWDTLQWLKEEDLLSIGITALGPRKKIVHALYELRKGTGXSDEKHEDAIAEPRRSGNQKVKLQREKSEKKVXGTTKPVTNKLITEYFPGSAGNGKKAPAASGEQXETKNSTLDSGHKSKAKNTSTNRKLRDVPQWCSIPGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFSHGKIYCSSITASLVNINIGIAYDKIHVLPLNEKVSIDGVDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRYSEEIANNPFLRMCRIRTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPXTLFLIGSYTIGKERLFLEVARTLXKKVYVTAAKLRLLKCLGFREDDMQWFTLNEHESNIHVAPMWTLASFKRLKHISSQYAGRFSLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHCSYAELKEFVKLISPDNIIPSVNNNGPESVDAMISLMLS* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2752 729 Gene3D - 402 712 IPR036866 -
Amo20g2752 729 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 181 726 - -
Amo20g2752 729 Pfam DNA repair metallo-beta-lactamase 613 715 IPR011084 -
Amo20g2752 729 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 181 726 - -
Amo20g2752 729 SMART SAM_4 235 301 IPR001660 GO:0005515
Amo20g2752 729 CDD SNM1A-1C-like_MBL-fold 387 540 - -
Amo20g2752 729 Gene3D - 543 690 - -
Amo20g2752 729 MobiDBLite consensus disorder prediction 307 390 - -
Amo20g2752 729 Gene3D - 233 303 IPR013761 -
Amo20g2752 729 MobiDBLite consensus disorder prediction 307 336 - -
Amo20g2752 729 Pfam SAM domain (Sterile alpha motif) 239 298 IPR001660 GO:0005515
Amo20g2752 729 ProSiteProfiles SAM domain profile. 238 301 IPR001660 GO:0005515
Amo20g2752 729 CDD SAM_superfamily 243 297 - -
Amo20g2752 729 SUPERFAMILY SAM/Pointed domain 237 301 IPR013761 -
Amo20g2752 729 MobiDBLite consensus disorder prediction 27 59 - -
Amo20g2752 729 SUPERFAMILY Metallo-hydrolase/oxidoreductase 407 711 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2752 Amo-Chr20 126058372 126062833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2752 241 295 Glycosyltransferase AT3G07170 45.455 2.97e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2752 K15340 - gmx:100816321 931.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2752 20 126058372 126062833 Amo20g2752 20 126058372 126062833 ECH
Amo10g2311 10 80947049 80950997 Amo20g2752 20 126058372 126062833 hybridization