Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2311 ATGATGATGAGTCGCAGCCACTGCCACACTGAAGCTCAGTTCTCTTTTCCCGAACACGACTATGACGACGATGATTTCCACCTCCCTCTTACGCAGACCACACTTGCCCCTTCCAATCCTCACCGTCCATCCAAGAARCTCAAGCACAAGTCAACGACCACACATCACTTCGGCAAGGAGAACGTTCCCCCTTACGACACTGACTTTAATATTGAAAACTGCAGCTTGGATTGCATCCCTTCCACCATAGATTGTGCCACCGTTTGTCATTCCCAACAGCAAAACGACGTCGTTCCTTCGTGCTCCGCGGAGTCCCAGGGCCTGAAGAAGAAAACCAACTGCGCGTACTTCCGAAATTCGATAGAGTCCAAGCTGGTGGCGTTGGGACCACACGCGCGGCTCAGCCACGGATCTGGAAAACCTTTGGATGATAATGATGATGATGATTCGGACCTCGATCTGTTGCTGAATTTGTGCAATGAGTTAGATGAAGATGAAAGATCTAGGATGATGCCGCGTGTTGATGGTGTTGGAGGTTCTGTTCTTTGTCCACTGTGTGATGTTGATATCTCTAGCTTCAGTGAGGAACAGCGACACCTTCACACCAATCATTGCCTTGACAGAGTGGAAGATCAAGCTCAAGATGTTGCAGTTCGTGATGGCGAGAATGATGGAGTGGGTGCTCAATTGGAGCCAGAGCCGAAGCCGAAAGTTGCCAATGTTTCTGCGGTTGTTGATTGGCTGCGCAGTATCGGCTTAGCGAAATACGAAGATATTTTTGTGAGGGAAGAAGTTGATTGGGACACCTTGCAGTGGCTGAAAGAAGAGGATCTATTAAGCATTGGTATTACTGCACTTGGTCCCAGAAAAAAGATTGTGCATGCTCTTTATGAACTTAGAAAAGGAACTGGCCWTTCAGATGAGAAACATGAGGATGCTATTGCAGAGCCTAGAAGGAGTGGAAACCAGAAAGTCAAATTGCAACGTGAAAAATCTGAAAAGAAAGTTKATGGCACAACTAAACCAGTGACAAACAAATTGATTACTGAATATTTTCCTGGCTCTGCTGGCAATGGGAAGAAAGCACCTGCGGCTTCAGGAGAACAGCSGGAAACAAAAAACAGTACCTTGGATTCTGGCCATAAAAGCAAGGCAAAAAATACGTCTACAAATAGAAAACTTCGTGATGTTCCCCAATGGTGTAGCATTCCTGGAACGCCTTTTCGGGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCTCACTGGTTTCTCACACACTTCCATTTAGACCATTATCAAGGTCTCACAAAGTCGTTCAGTCATGGAAAGATCTATTGCTCTTCTATTACCGCTAGCCTTGTAAATATAAACATTGGGATTGCCTATGATAAAATACATATTTTGCCTCTGAACGAGAAGGTCTCAATAGACGGTGTTGATGTGACCTGCTTGGATGCCAACCATTGTCCGGGTTCGATAATCATCCTCTTTCAACCTCCGAATGGTAAGGCGGTTCTCCATACTGGGGATTTTCGGTACAGTGAAGAAATAGCAAACAATCCTTTTCTCCGGATGTGTCGTATCCATACTCTAATTCTTGATACAACATATTGTAACCCACAGTATGACTTTCCAAAACAAGAAGCTGTCATACAATTTGTTATTGATGCCATTCAAGCGGAGGCTTTTAATCCCWAGACCCTTTTTCTGATTGGCAGCTATACTATTGGAAAAGAAAGGCTATTCTTGGAGGTTGCTCGCACACTTYGTAAGAAGGTTTACGTGACAGCGGCAAAGTTGCGTCTTCTAAAATGTTTGGGATTTAGGGAGGAGGATATGCAGTGGTTTACATTAAATGAGCACGAAAGCAACATTCACGTTGCTCCTATGTGGACACTTGCAAGTTTCAAAAGATTGAAACACATATCAAGTCAATATGCGGGTCGGTTCAGTCTTATAGTTGCTTTCTCTCCCACTGGTTGGACATTTGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGRTGGCAGCAGGGTACTATTATAAGGTATGAAGTGCCATACAGTGAGCATTGCAGCTATGCAGAACTCAAAGAGTTTGTGAAACTTATATCCCCYGATAACATTATACCAAGTGTTAATAACRACGGACCAGAATCCGTCGATGCYATGATTTCTCTCATGTTGYCTTGA 2193 0.4396 MMMSRSHCHTEAQFSFPEHDYDDDDFHLPLTQTTLAPSNPHRPSKKLKHKSTTTHHFGKENVPPYDTDFNIENCSLDCIPSTIDCATVCHSQQQNDVVPSCSAESQGLKKKTNCAYFRNSIESKLVALGPHARLSHGSGKPLDDNDDDDSDLDLLLNLCNELDEDERSRMMPRVDGVGGSVLCPLCDVDISSFSEEQRHLHTNHCLDRVEDQAQDVAVRDGENDGVGAQLEPEPKPKVANVSAVVDWLRSIGLAKYEDIFVREEVDWDTLQWLKEEDLLSIGITALGPRKKIVHALYELRKGTGXSDEKHEDAIAEPRRSGNQKVKLQREKSEKKVXGTTKPVTNKLITEYFPGSAGNGKKAPAASGEQXETKNSTLDSGHKSKAKNTSTNRKLRDVPQWCSIPGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFSHGKIYCSSITASLVNINIGIAYDKIHILPLNEKVSIDGVDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRYSEEIANNPFLRMCRIHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPXTLFLIGSYTIGKERLFLEVARTLXKKVYVTAAKLRLLKCLGFREEDMQWFTLNEHESNIHVAPMWTLASFKRLKHISSQYAGRFSLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHCSYAELKEFVKLISPDNIIPSVNNXGPESVDAMISLMLX* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2311 730 SUPERFAMILY Metallo-hydrolase/oxidoreductase 408 712 IPR036866 -
Amo10g2311 730 Gene3D - 234 304 IPR013761 -
Amo10g2311 730 Pfam DNA repair metallo-beta-lactamase 612 715 IPR011084 -
Amo10g2311 730 CDD SAM_superfamily 244 298 - -
Amo10g2311 730 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 182 726 - -
Amo10g2311 730 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 182 726 - -
Amo10g2311 730 CDD SNM1A-1C-like_MBL-fold 388 541 - -
Amo10g2311 730 MobiDBLite consensus disorder prediction 308 391 - -
Amo10g2311 730 Gene3D - 544 691 - -
Amo10g2311 730 Pfam SAM domain (Sterile alpha motif) 240 299 IPR001660 GO:0005515
Amo10g2311 730 Gene3D - 403 713 IPR036866 -
Amo10g2311 730 MobiDBLite consensus disorder prediction 308 337 - -
Amo10g2311 730 MobiDBLite consensus disorder prediction 27 59 - -
Amo10g2311 730 SUPERFAMILY SAM/Pointed domain 238 302 IPR013761 -
Amo10g2311 730 SMART SAM_4 236 302 IPR001660 GO:0005515
Amo10g2311 730 ProSiteProfiles SAM domain profile. 239 302 IPR001660 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2311 Amo-Chr10 80947049 80950997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2311 242 296 Glycosyltransferase AT3G07170 45.455 3.06e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2311 K15340 - gmx:100816321 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2311 10 80947049 80950997 Amo20g2752 20 126058372 126062833 hybridization