Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2730 ATGAATGAGACATTGAATGTGGCAGCACAAATGGGAGACATAGACTTGCTCTACAAGCTTCTTCAGGTGGATCCATATCTCTTGGACCGCATTGCTTCCGTACCATTCATCAATACACCTCTGCATTTTGCAGCCTCCGCGGGTCAAACCAGTTTTGCCACTGAGATCATGAGACTGAAGCCTATCTTTGCATGGAAGCTGAACCTGTATGGGTTTAGCCCCGTGCACCTTGCATTACAGAACGGAAACTACAGAACGGTGTGCAGATTTATAGACATCAACAAAGACCTTGTCCGGGTCAAGGGAAGAGAGGGACTCACACCTTTGCATTTAGCGACTAAGATTGGGCAAACCGATCTTGTAGCGAGATTCTTGTCGGCTTGCTCAGGTTCCATTGAAGATGTGAATGTGGGGAGTGAGACTGCTTTGCATATGGCGGTTAAATATAAGCAGCTTGAGGCTCTTGAGGTTCTGGTCGGCTGGGTTCGTAGGAGTTGCCACAAGTGTGCTCACGCAACAGAGAAACGGGTACTTAATTGGGCGGACGATAAAGGCAACACCGTTCTCCACCTTGCACTTCTCAAAGCCTTACCACCACAGACGGTTAGATTGTTGATAGACAGCAACATTGACTTAAACATCAAGAATTTAGAGGGCTCAACAGCTTTAGACATTGTGGAGAACAATCAAAGGCAACAAGTTAACACTGCAGATATCACTCAGATCAGGGACATGTTAGTTAGAGGGGGAGCTTTACGCGCCACCTCACTCGCCATCACACCCCTGGAAGAAGACCTAAGATCAAGAATCACTTTCCACGAGAGAGTAGCAATCTACATCACGCGCCTCAGAAGGCGAATCTCAAACGACACGCGCAACGCCCTCTTAGTAGTGGCGATACTCTTCGCAACAAGCACCTACGAAGCCGCAATTAACCCCCCCGGCGGAGTGTACCAGGCGGAGGCCAAATCTCCACCATCTCCACCACCACCTTCGAGCAAGTTCAGCATCCCTTTCAGGCTTAACCATCATCATCATAATAACAATGTTGGTGCTGGGAAAGCGGTGATGAGGGTTCAAGATTTCATTTGGTTCTGGTCATTTAACACGTGCGCTTTTTATCTATCGATTTTGATGATATGTTTGTTAATGCCGAGAGGGCGTGTTAGTGTTATAGTGGCTTCTCCGCTGTTTCTATTCTGTGGTTGCTATATGTTCTCCATGCTCGTTATTTCGCCAAGCTGTAAATTGGGCATAGCAGCTGTGGCTCTACCATGCATTCTTTTGGTTTTGAACTTTTGGGGAGGTTCGGTATACATTCGATTATCCAAAAAGCTCAAAAGATATCGTTCTAAACAGGAAGATGGATCTAGATTCTCAGGAGGAAACAAATGGTGA 1398 0.4664 MNETLNVAAQMGDIDLLYKLLQVDPYLLDRIASVPFINTPLHFAASAGQTSFATEIMRLKPIFAWKLNLYGFSPVHLALQNGNYRTVCRFIDINKDLVRVKGREGLTPLHLATKIGQTDLVARFLSACSGSIEDVNVGSETALHMAVKYKQLEALEVLVGWVRRSCHKCAHATEKRVLNWADDKGNTVLHLALLKALPPQTVRLLIDSNIDLNIKNLEGSTALDIVENNQRQQVNTADITQIRDMLVRGGALRATSLAITPLEEDLRSRITFHERVAIYITRLRRRISNDTRNALLVVAILFATSTYEAAINPPGGVYQAEAKSPPSPPPPSSKFSIPFRLNHHHHNNNVGAGKAVMRVQDFIWFWSFNTCAFYLSILMICLLMPRGRVSVIVASPLFLFCGCYMFSMLVISPSCKLGIAAVALPCILLVLNFWGGSVYIRLSKKLKRYRSKQEDGSRFSGGNKW* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2730 465 ProSiteProfiles Ankyrin repeat profile. 184 217 IPR002110 GO:0005515
Amo20g2730 465 SMART ANK_2a 36 65 IPR002110 GO:0005515
Amo20g2730 465 SMART ANK_2a 138 168 IPR002110 GO:0005515
Amo20g2730 465 SMART ANK_2a 104 134 IPR002110 GO:0005515
Amo20g2730 465 SMART ANK_2a 184 214 IPR002110 GO:0005515
Amo20g2730 465 SMART ANK_2a 70 99 IPR002110 GO:0005515
Amo20g2730 465 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Amo20g2730 465 Pfam Ankyrin repeats (3 copies) 99 159 IPR002110 GO:0005515
Amo20g2730 465 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Amo20g2730 465 PANTHER HOMEOBOX PROTEIN WARIAI 10 430 - -
Amo20g2730 465 SUPERFAMILY Ankyrin repeat 4 232 IPR036770 -
Amo20g2730 465 Pfam Domain of unknown function 289 388 IPR026961 -
Amo20g2730 465 Gene3D - 1 239 IPR036770 -
Amo20g2730 465 ProSiteProfiles Ankyrin repeat profile. 104 137 IPR002110 GO:0005515
Amo20g2730 465 PANTHER ANKYRIN REPEAT PROTEIN 10 430 - -
Amo20g2730 465 Pfam Ankyrin repeat 185 216 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2730 Amo-Chr20 125323336 125325703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2730 1 322 Miscellaneous Gene Families AT4G10720 45.062 9.98e-87 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2730 - - aip:107621997 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2291 10 80227314 80229474 Amo20g2730 20 125323336 125325703 hybridization