Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2291 ATCATTAACGAAACAATGAATGAGACATTGAATGTGGCAGCACAAATGGGAGACATAGACTTGCTCTACAAGCTTCTTCAGGTGGATCCATATCTCTTGGACCGCATTGCTTCCGTACCATTCATCAATACACCTCTGCATTTTGCAGCCTCCGCGGGTCAAACCAGTTTTGCCACTGAGATCATGAGACTGAAGCCTATCTTTGCATGGAAGCTGAACCTGTATGGGTTTAGCCCCGTGCACCTTGCATTACAGAACGGAAACTACAGAACGGTGTGCAGATTTATAGACATCAACAAAGACCTTGTCCGGGTCAAGGGAAGAGAGGGACTCACACCTTTGCATTTAGCGACTAAGATTGGGCAAACCGATCTTGTAGCGAGATTCTTGTCGGCTTGCTCAGGTTCCATTGAAGATGTGAATGTGGGGAGTGAGACTGCTTTGCATATGGCGGTTAAATATAAGCAGCTTGAGGCTCTTGAGACGGTTAGATTGTTGATAGACAGCAACATTGACTTAAACATCAAGAATTTAGAGGGCTCAACAGCTTTAGACATTGTGGAGAACAATCAAAGGCAACAAGTTAACACTGCAGATATCACTCAGATCAGGGACATGTTAGTTAGAGGGGGAGCTTTACGCGCCACCTCACTCGCCATCACACCCCTGGAAGAAGACCTAAGATCAAGAATCACTTTCCACGAGAGAGTAGCAATCTACATCACGCGCCTCAGAAGGCGAATCTCAAACGACACGCGCAACGCCCTCTTAGTAGTGGCGATACTCTTCGCAACAAGCACCTACGAAGCCGCAATTAACCCCCCCGGCGGAGTGTACCAGGCGGAGGCCAAATCTCCACCATCTCCACCACCACCTTCGAGCAAGTTCAGCATCCCTTTCAGGCTTAACCATCATCATCATAATAACAATGTTGGTGCTGGGAAAGCGGTGATGAGGGTTCAAGATTTCATTTGGTTCTGGTCATTTAACACGTGCGCTTTTTATCTATCGATTTTGATGATATGTTTGTTAATGCCGAGAGGGCGTGTTAGTGTTATAGTGGCTTCTCCGCTGTTTCTATTCTGTGGTTGCTATATGTTCTCCATGCTCGTTATTTCGCCAAGCTGTAAATTGGGCATAGCAGCTGTGGCTCTACCATGCATTCTTTTGGTTTTGAACTTTTGGGGAGGTTCGGTATACATTCGATTATCCAAAAAGCTCAAAAGATATCGTTCTAAACAGGAAGATGGATCTAGATTCTCAGGAGGAAACAAATGGTGA 1281 0.4575 IINETMNETLNVAAQMGDIDLLYKLLQVDPYLLDRIASVPFINTPLHFAASAGQTSFATEIMRLKPIFAWKLNLYGFSPVHLALQNGNYRTVCRFIDINKDLVRVKGREGLTPLHLATKIGQTDLVARFLSACSGSIEDVNVGSETALHMAVKYKQLEALETVRLLIDSNIDLNIKNLEGSTALDIVENNQRQQVNTADITQIRDMLVRGGALRATSLAITPLEEDLRSRITFHERVAIYITRLRRRISNDTRNALLVVAILFATSTYEAAINPPGGVYQAEAKSPPSPPPPSSKFSIPFRLNHHHHNNNVGAGKAVMRVQDFIWFWSFNTCAFYLSILMICLLMPRGRVSVIVASPLFLFCGCYMFSMLVISPSCKLGIAAVALPCILLVLNFWGGSVYIRLSKKLKRYRSKQEDGSRFSGGNKW* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2291 426 PANTHER HOMEOBOX PROTEIN WARIAI 15 162 - -
Amo10g2291 426 PANTHER HOMEOBOX PROTEIN WARIAI 161 391 - -
Amo10g2291 426 ProSiteProfiles Ankyrin repeat profile. 143 178 IPR002110 GO:0005515
Amo10g2291 426 ProSiteProfiles Ankyrin repeat region circular profile. 143 177 - -
Amo10g2291 426 PANTHER ANKYRIN REPEAT PROTEIN 15 162 - -
Amo10g2291 426 PANTHER ANKYRIN REPEAT PROTEIN 161 391 - -
Amo10g2291 426 Pfam Domain of unknown function 250 350 IPR026961 -
Amo10g2291 426 Pfam Ankyrin repeats (3 copies) 81 177 IPR002110 GO:0005515
Amo10g2291 426 SUPERFAMILY Ankyrin repeat 10 193 IPR036770 -
Amo10g2291 426 ProSiteProfiles Ankyrin repeat region circular profile. 109 130 - -
Amo10g2291 426 Gene3D - 2 201 IPR036770 -
Amo10g2291 426 ProSiteProfiles Ankyrin repeat profile. 109 142 IPR002110 GO:0005515
Amo10g2291 426 SMART ANK_2a 143 175 IPR002110 GO:0005515
Amo10g2291 426 SMART ANK_2a 75 104 IPR002110 GO:0005515
Amo10g2291 426 SMART ANK_2a 41 70 IPR002110 GO:0005515
Amo10g2291 426 SMART ANK_2a 109 139 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2291 Amo-Chr10 80227314 80229474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2291 6 283 Miscellaneous Gene Families AT4G10720 40.248 1.10e-70 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2291 - - aip:107621997 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2291 10 80227314 80229474 Amo20g2730 20 125323336 125325703 hybridization