Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2702 ATGGAGCAATTTTTCTCATATCACTATGCAATGATGATCAAACGCAGTATCATGATTGGTTTCTTCCACTTTGTGTTTTATATGTTTATATTGAGCAACCTTGCTCATTCGTCGTCATCGTCCACTCCAAACTGTAAAGCATGGCTGGTCCAATCCATCCCTACAAATATGCCTCACCTCTTCCATGTCCCTGGTGTCCTCTCTACCGGGGATGTGCTAAGTTGGATGGCTGGAAACTCCACCAGGAGGCTTGACATAACTGCTCAGTACTGGGAGCTGCTTGCTTCTCCGGATGATCCTCGCTCCGGCGATTATGGTTACTCTGAGCAACAGATGCAAGAGTTTGGTGCTCAAGAAGGTGCTGCACTCTATCAAGCGCTGGAGGATGCTGCAGACCGCAATGTTAGCATCAGGTTACTGTCACATTCTGGAGTCTATCCAACATTTACCTTAGAGCCATCAAAACTTGCTGCCGGAAGGCCAAACGTCGAGAATGTGACCCTGCTTCTTAAGGATTGGTGGGGTTCAGGCATTGTCCATGCCAAAGTTTGGATATCTGATAGTAGAGATGTGTACATTGGATCTGCAAACAATGACTGGAAATCTCTTACACAGGTCAAGGAAGTAGGAATTTATTTTGCTGGTTGTCCAAGAATAGCTAACAAGGTTGAGATATATTTCGACAGTTTGTGGAAACTTGCATCTCTTAATTCTTCAGATTACACAAAAACAGTGTTTGATCAAACGTGGCAAGTTGAAAGAAAGGTTCCCTGTTGGTCACATTTCATTGATCCTAAAGAGAGGTGCAAGTCGCCTCTCCCTCGTTATGTAGAGACCCCTCGTGTTACAGGATATCCTATTCTGTCTGATCCTCACATATTTGAAGTTTCAATTCAAACATCTTGGAGTAACAATTCAACAATGCTACCCCAAGTCAGCTATCTCTCCTTTGCTCCTCCAGAGCTATTGTTCGGCAAGTATCAGGCTGATGAGCAAGCATGGATTGAAACAATTAAATCTGTTGGAGCGAAGGAGACAGTTAGAATCAGTACCATGGATTGGCTTGGTCAATCAGAATTTATGGACCCAACAATTTTCTGGCCATCATTATCCACAGCAATATCAGAGGTAACTTCAAATCATTGTTTCTTTTGTTGCTTTCTTTCTTATCAATGA 1176 0.4303 MEQFFSYHYAMMIKRSIMIGFFHFVFYMFILSNLAHSSSSSTPNCKAWLVQSIPTNMPHLFHVPGVLSTGDVLSWMAGNSTRRLDITAQYWELLASPDDPRSGDYGYSEQQMQEFGAQEGAALYQALEDAADRNVSIRLLSHSGVYPTFTLEPSKLAAGRPNVENVTLLLKDWWGSGIVHAKVWISDSRDVYIGSANNDWKSLTQVKEVGIYFAGCPRIANKVEIYFDSLWKLASLNSSDYTKTVFDQTWQVERKVPCWSHFIDPKERCKSPLPRYVETPRVTGYPILSDPHIFEVSIQTSWSNNSTMLPQVSYLSFAPPELLFGKYQADEQAWIETIKSVGAKETVRISTMDWLGQSEFMDPTIFWPSLSTAISEVTSNHCFFCCFLSYQ* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2702 391 PANTHER PHOSPHOLIPASE D - RELATED 25 381 - -
Amo20g2702 391 Gene3D Endonuclease Chain A 71 235 - -
Amo20g2702 391 SUPERFAMILY Phospholipase D/nuclease 80 233 - -
Amo20g2702 391 CDD PLDc_vPLD3_4_5_like_1 49 216 - -
Amo20g2702 391 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 175 202 IPR001736 GO:0003824
Amo20g2702 391 Pfam PLD-like domain 119 231 IPR025202 -
Amo20g2702 391 SMART pld_4 175 202 IPR001736 GO:0003824
Amo20g2702 391 PANTHER GM01519P-RELATED 25 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2702 Amo-Chr20 124764342 124767470 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2702 K16860 - gmx:100778897 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2702 20 124764342 124767470 Amo20g2702 20 124764342 124767470 ECH
Amo10g2259 10 79363677 79366374 Amo20g2702 20 124764342 124767470 hybridization