Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2646 ATGCTGCGGAAACTGGTGACGGTGCCGGGGAAGAAGAAACCGGGCACAGTGCCGGTTTATCTGAACGTGTACGATCTGACTCCCATTAACGGCTATGCMTATTGGCTTGGCCTCGGTGTCTATCACTCTGGTGTTCAAGTTCATGGAATCGAATATGGTTTCGGTGCGCACGAGCACGATACGACGGGGATCTTCGAGGTTCAGCCACGGCACTGCCCTGGCTTCACTTTCAGGAAATCGATATTCATAGGAACAACGGATCTGGGCCCCAAAGATGTTAGGGCTTTCATGGAGAAGCTTGCTCACCACTACTCTGGCAACACCTACCACCTCATCTCCAAGAATTGCAACCACTTTTGCAACGATGTTTGCCTCARGTTAACCGGAAAATCTATCCCTAGATGGGTTAATCGACTTGCTAGACTCGGTCTTCTCTGCAACTGTGTTCTTCCTCCGGGGCTTAACGACACCAAGGTTCGACAAGTTACATCAGAAAAGGTTCAGGAAGGAGAGAAGAAGAAGATGAGGAGTCAATCAAGCAGGTACGAGGGTTCCTCCAATCCTCCATCAGTGCCRCGAGGTTCGGCGATTAAAAGTAGTAGCCAAAGACATTGCCTTCCACCATCTTCGTCCCTGATTAGTGCTCCTTCRGGTTCAACCTTAACAGTAAAGTAA 675 0.4919 MLRKLVTVPGKKKPGTVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGIEYGFGAHEHDTTGIFEVQPRHCPGFTFRKSIFIGTTDLGPKDVRAFMEKLAHHYSGNTYHLISKNCNHFCNDVCLXLTGKSIPRWVNRLARLGLLCNCVLPPGLNDTKVRQVTSEKVQEGEKKKMRSQSSRYEGSSNPPSVPRGSAIKSSSQRHCLPPSSSLISAPSGSTLTVK* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2646 224 MobiDBLite consensus disorder prediction 180 224 - -
Amo20g2646 224 Gene3D PPPDE domains 12 174 IPR042266 -
Amo20g2646 224 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 2 222 - -
Amo20g2646 224 MobiDBLite consensus disorder prediction 166 224 - -
Amo20g2646 224 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Amo20g2646 224 Pfam PPPDE putative peptidase domain 18 150 IPR008580 GO:0008233
Amo20g2646 224 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Amo20g2646 224 PANTHER DESUMOYLATING ISOPEPTIDASE 2 222 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2646 Amo-Chr20 122829425 122831454 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2646 K22763 - gmx:100306675 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2646 20 122829425 122831454 Amo20g2646 20 122829425 122831454 ECH
Amo10g2189 10 76801448 76803775 Amo20g2646 20 122829425 122831454 hybridization
Amo16g3697 16 148051865 148053853 Amo20g2646 20 122829425 122831454 PCT
Amo06g2819 06 93414011 93416109 Amo20g2646 20 122829425 122831454 PCT
Amo20g2646 20 122829425 122831454 Amo16g3697 16 148051865 148053853 PCT
Amo20g2646 20 122829425 122831454 Amo06g2819 06 93414011 93416109 PCT