Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2580 ATGATGATGGCGTTCTCTCTCTGCCACACCTCTTCTTTCTTCATCGTTCACCGCTTCCCACAACAAACTTTGATAAGAACAAGACGAATTCATTTCCAATTGATTCGTGCAGTGCAATCAGGGGAATCAGAAACTGAAAAGTCTGCACAGAAAAAGACTGAAGAATCACCATCTTCAACTGCTGCTGCTTCTCCTCCTCCTAGACCAAAGAAACCCGTCTATTCTATGAAGAAGGGCCAGATTGTGAGAGTGGACAAAGAAAAATATCTCAACAGCATCAATTATCTTTCTGTTGGGCATCCGCCATACTACAAAGGATTGGATTACATCTATGAAGACCGTGGGGAGGTCCTGGATATGCGTATATTTGAAACAGGGGAGTATGCACTTGTAAGTGATCCTATATCAAACTCATTCTTACCCTTGTTAGTTTGTTTACATGAAATACAGAAGAAAGAAAAGAATAGAGAAATTGCAATACACAACGGAACTGATGAGAACTCCTAG 507 0.4083 MMMAFSLCHTSSFFIVHRFPQQTLIRTRRIHFQLIRAVQSGESETEKSAQKKTEESPSSTAAASPPPRPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEVLDMRIFETGEYALVSDPISNSFLPLLVCLHEIQKKEKNREIAIHNGTDENS* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2580 168 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT O, CHLOROPLASTIC 3 143 - -
Amo20g2580 168 MobiDBLite consensus disorder prediction 41 76 - -
Amo20g2580 168 Pfam Cyanobacterial and plant NDH-1 subunit O 76 132 IPR020905 GO:0005886|GO:0016655
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2580 Amo-Chr20 120735353 120736684 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2580 - - gmx:100500669 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2580 20 120735353 120736684 Amo20g2580 20 120735353 120736684 ECH
Amo10g2094 10 74926159 74927437 Amo20g2580 20 120735353 120736684 hybridization