Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2521 ATGTATGTTTCACATTGGTATTTAAGGGGATTTGAATATAAGGAGGATATGCTGCTCTCTGATGATGGTGGAGAAGATGAAGTGTTCTTTGATTCTCTGGATTGCTTGTCACCACCTCACGATGATGATGATGATGAGTTTGGTTATGAGGTTTGGATGAATGAGCCTCTTTGTGTGGAGGAAAGGAGGGAAAGGTTTCTTCAGAGGATGGGTATGGTTAGTGTTAGTGTCTCTTCTTCACACAATATGAATGATTTTGATGATGTCTCATCTTCAAATGCTTCCATTTCCTGTGCTCCTACTTCTGAAGACGTAGCATTGTTTGATGAAATTAAGAAACGACCGGAGAATTCACCGGTTACTTTGGCCAAACAAGAGCTTGGAGAATTTGGAACTTGTACAAGTAAAAAGAAGAAGAATTGGTGGAACCGCATTGCATATGGAATGAAAATTGGATCAAGATTGGATAAGGGAAGTACTAAAATTACAAGAAGGATCAATGTGAATCAGAATAAAAAGAGGTGGATGGAATTGAGTGCATTGTTTACTGGACAGAATATCAGAGCTCACGATGGCCTAATTTGGACCATGAAATTTAGTCCCAGTGGCCGCTATCTTGCTAGTGGAGGCCAAGACGGCGTTGTTCGCATTTGGCGCGTCGTATCGACCGATGCATCCAGTCTTTGCTTCAATGGAGTTAAGAGTGCTGACAGCAAAGTGAAACCACACAACTCTGCTCCTAAAACTCAATCCTTTGTTGTGTTCCCAAACAGGATTTTCCAAATTGAGGAATCACCAATGCAAGAATTTTGTGGTCATTCCAGTGATGTCTTGGATCTGGCTTGGTCAAGTTCGGATATTCTGCTTTCATCTTCAATGGATAAAACTGTTCGCATGTGGCAGATTGGTTGTAATCAATGTCTAAATGTTTTCCATCACACAGATTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGCTCCATAGATGGTAAAGTTCGAATATGGGGAATGCGTGAAGAGCGAGTGGTTGACTGGGCAGACATTCGAGATGTCATAACTGCCATAAGTTACCAACCAAATGGAAAGGGATTTGTTGTTGGTTCCCTTACCGGCATATGTCGCTTTTATGTTGCTTCGGGCAAACATTTCCATCTTGAGGCACAGATTAATGTTAGCGGAAAGAAGAGAACATCAACATCTCGCAACAAGATCACGGGAATTCAGTTTTCCAAGAAAAACCACCAAAGAGTCATGATCACATCAGAAGATTCCAAAGTCCGAATATTGGAAGGCATGGAACTTGTTCAGATATTTAAAGGACGTCGAAAATCTGGAAGTCAGACATCAGGTGCATTTATGTCGAGCGAGAAACATATAATTTCAGTTGGAGATGACTCTCGTGTATATATTTGGAACTACAAAGACTTTGGAAATGCTTCATCCAAGCATGCAAAATCGAACAATTCCTGTGAGTACTTTTGCTCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGGAATGAGCACAGAAAGTAGCAACTCCTACAACAATTTTGCACATTGTTTCCCAGAAACTCAACACCAGCTAGAAGCTGCTCCCATGGTAGTTGGTTCTTCGGAACGTTTTTCCTTAGGTAGTTGGTTCTCCATTGACGGCACGTGCCGCGGTTCCATGACATGGCCAGAGGAGAAGCTCCCTAGTTGGGATTTACCTCTTGCGGAGCACGATGAATTCCATCACAGCCGGCCGCAGCTACGCCCCAAGGAACCTTGTAATGACGGCTGTGTGTCAGAAACATGGGGACTATCGATAGTTGCGGCCGGTTGTGATGGGACCATCAAGACATTCCACAACTTTGGATTGCCTGTTAGGCTCTAG 1899 0.4271 MYVSHWYLRGFEYKEDMLLSDDGGEDEVFFDSLDCLSPPHDDDDDEFGYEVWMNEPLCVEERRERFLQRMGMVSVSVSSSHNMNDFDDVSSSNASISCAPTSEDVALFDEIKKRPENSPVTLAKQELGEFGTCTSKKKKNWWNRIAYGMKIGSRLDKGSTKITRRINVNQNKKRWMELSALFTGQNIRAHDGLIWTMKFSPSGRYLASGGQDGVVRIWRVVSTDASSLCFNGVKSADSKVKPHNSAPKTQSFVVFPNRIFQIEESPMQEFCGHSSDVLDLAWSSSDILLSSSMDKTVRMWQIGCNQCLNVFHHTDYVTCIQFNPVDENYFISGSIDGKVRIWGMREERVVDWADIRDVITAISYQPNGKGFVVGSLTGICRFYVASGKHFHLEAQINVSGKKRTSTSRNKITGIQFSKKNHQRVMITSEDSKVRILEGMELVQIFKGRRKSGSQTSGAFMSSEKHIISVGDDSRVYIWNYKDFGNASSKHAKSNNSCEYFCSKGVTVAIPWSGMSTESSNSYNNFAHCFPETQHQLEAAPMVVGSSERFSLGSWFSIDGTCRGSMTWPEEKLPSWDLPLAEHDEFHHSRPQLRPKEPCNDGCVSETWGLSIVAAGCDGTIKTFHNFGLPVRL* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2521 632 PANTHER WD REPEAT DOMAIN 44 21 95 IPR040324 -
Amo20g2521 632 PANTHER WD REPEAT DOMAIN 44 123 632 IPR040324 -
Amo20g2521 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Amo20g2521 632 Gene3D - 178 514 IPR015943 GO:0005515
Amo20g2521 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 220 - -
Amo20g2521 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 302 - -
Amo20g2521 632 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Amo20g2521 632 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Amo20g2521 632 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Amo20g2521 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Amo20g2521 632 SUPERFAMILY WD40 repeat-like 185 622 IPR036322 GO:0005515
Amo20g2521 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 345 - -
Amo20g2521 632 SMART WD40_4 398 437 IPR001680 GO:0005515
Amo20g2521 632 SMART WD40_4 438 479 IPR001680 GO:0005515
Amo20g2521 632 SMART WD40_4 180 219 IPR001680 GO:0005515
Amo20g2521 632 SMART WD40_4 345 384 IPR001680 GO:0005515
Amo20g2521 632 SMART WD40_4 304 343 IPR001680 GO:0005515
Amo20g2521 632 SMART WD40_4 263 301 IPR001680 GO:0005515
Amo20g2521 632 SMART WD40_4 578 624 IPR001680 GO:0005515
Amo20g2521 632 Pfam WD domain, G-beta repeat 306 342 IPR001680 GO:0005515
Amo20g2521 632 Pfam WD domain, G-beta repeat 187 218 IPR001680 GO:0005515
Amo20g2521 632 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Amo20g2521 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 310 IPR001680 GO:0005515
Amo20g2521 632 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 123 632 - -
Amo20g2521 632 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 21 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2521 Amo-Chr20 118556398 118560095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2521 171 383 Miscellaneous Gene Families AT5G08390 21.101 1.91e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2521 K20241 - gmx:100801576 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2521 20 118556398 118560095 Amo20g2521 20 118556398 118560095 ECH
Amo10g2012 10 72885076 72888852 Amo20g2521 20 118556398 118560095 hybridization