Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2012 ATGTATGTTTCACATTGGTATTTAAGGGGATTTCAATATAAGGAGGATATGCTGCTCTCTCATGATGGTGGAGAAGATGAAGTGTTCTTTGATTCTCTGGATTGTTTGTCACCACCTCACGATGATGATGATGATGAGTTTGGTTATGAGGTTTGGATGAATGAGCCTCTTTGTGTGGAGGAAAGGAGGGAAAGGTTTCTTCAGAGAATGGGTATGGTTAGTGTTAGTGTCTCTTCTTCACACAATATGAATGATTTTGATGATGTCACATCTTCAACTGCTTCCATTTCTTGTGTTCCTACTTCTCAAGACGTAGCATTGTTTGATGAAATTAAGAAACGACCGGAGAATTCACCGGTTACTTTGCCCAAACAAGACTTTGGAGAATTTGGAACTTGTACAAGTAAAAAGAAGAAGAATTGGTGGAATCGCATTGCATATGGAATGAAAATTGGATCAAGATTGGATAAGGGAAGTACTAAAATTACAAGAAGGATCAATGTGAATCAGATTAAAAAGAGGTGGATGGAATTGAGTGCATTGTTTACTGGGCAGAATATTAGAGCTCACGATGGCCTAATTTGGACCATGAAATTTAGTCCCAGTGGCCGCTATCTTGCTAGTGGAGGCCAAGACGGCGTTGTTCGCATTTGGCGTGTCGTATCCACCGAGGCATCCAGTCTTTGCTTCAATGGAGTTAAGAGTGCTGACAGCAAAGTGAAACCACACAACTCTGCTCCTAAAACTCAATCCTTTGTTGTGTTCCCAAACAAGATTTTCCAAATTGAGGAATCACCAATGCAAGAATTTTGTGGTCATTCCAGTGATGTCTTGGATCTGGCTTGGTCAAGTTCAGATATTCTGCTTTCATCTTCAATGGATAAAACTGTTCGCATGTGGCAGATTGGTTGTAATCAATGTCTACATGTTTTCCATCACACAGATTATGTGACATGCATTCAATTCAATCCTGTTGATGAAAATTACTTCATCAGTGGCTCCATAGATGGTAAAGTTCGAATATGGGGAATGCGCGAAGAGCGAGTGGTTGACTGGGCAGACATTCGAGATGTCATAACTGCCATAAGTTACCAACCAAATGGAAAGGGATTTGTTGTTGGTTCCCTTACGGGCATATGTCGCTTTTATGTTGCTTCGGGCAAACATTTCCATCTTGAGGCACAGATTAATGTTAGCGGAAAGAAGAGAACATCAACATCTCGCAACAAGATCACTGGAATTCAGGTTTTGATCTCGACATTCTTCACTAAAAAGAATTTTCATATTTTATACTTAACTTTGTTAATATTGCAACACTTGGTTCCATTGCAGTTTTCCAAGAAAAACCACCAAAGAGTCATGATCACATCAGAAGATTCCAAAGTCCGAATATTAGAAGGCATGGAACTTGTTCAGACATTTAAAGGCCGTCGAAAATCTGGAAGTCAGACATCAGGTGCATTTATGTCGAGCGAGAAACATATAATTTCAGTTGGAGATGACTCTCGTGTATATATTTGGAACTACAAAGACTTTGGAAATGCTTCATCCAAGCATGCAAAATCGAACAATTCCTGTGAGTACTTTTGCTCCAAGGGTGTTACTGTTGCGATACCTTGGTCAGGAATGAGCACAGAAAGTAGCAACTCCTACAACAATTTTGCACATTGTTTCCCAGAAACTCAACACCAGCTAGAAGCTGCTCCCATGGTAGTTGGTTCTTCGGAACGTTTTTCCTTAGGTAGTTGGTTCTCCATTGACGGCACGTGCCGTGGTTCCATGACATGGCCAGAGGAGAAGCTCCCTAGTTGGGATTTACCTCTTGCGGAGCACGATGAATTCCATCACAGCCGGCCACAGCTACGCCCCAAAGAACCTTGTAATGACGGCTGTGTGTCAGAAACATGGGGACTATCGATAGTTGCAGCCGGTTGTGATGGGACCATCAAGACATTCCACAACTTTGGATTGCCTGTTAGGCTCTAG 1986 0.4164 MYVSHWYLRGFQYKEDMLLSHDGGEDEVFFDSLDCLSPPHDDDDDEFGYEVWMNEPLCVEERRERFLQRMGMVSVSVSSSHNMNDFDDVTSSTASISCVPTSQDVALFDEIKKRPENSPVTLPKQDFGEFGTCTSKKKKNWWNRIAYGMKIGSRLDKGSTKITRRINVNQIKKRWMELSALFTGQNIRAHDGLIWTMKFSPSGRYLASGGQDGVVRIWRVVSTEASSLCFNGVKSADSKVKPHNSAPKTQSFVVFPNKIFQIEESPMQEFCGHSSDVLDLAWSSSDILLSSSMDKTVRMWQIGCNQCLHVFHHTDYVTCIQFNPVDENYFISGSIDGKVRIWGMREERVVDWADIRDVITAISYQPNGKGFVVGSLTGICRFYVASGKHFHLEAQINVSGKKRTSTSRNKITGIQVLISTFFTKKNFHILYLTLLILQHLVPLQFSKKNHQRVMITSEDSKVRILEGMELVQTFKGRRKSGSQTSGAFMSSEKHIISVGDDSRVYIWNYKDFGNASSKHAKSNNSCEYFCSKGVTVAIPWSGMSTESSNSYNNFAHCFPETQHQLEAAPMVVGSSERFSLGSWFSIDGTCRGSMTWPEEKLPSWDLPLAEHDEFHHSRPQLRPKEPCNDGCVSETWGLSIVAAGCDGTIKTFHNFGLPVRL* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2012 661 PANTHER WD REPEAT DOMAIN 44 21 99 IPR040324 -
Amo10g2012 661 PANTHER WD REPEAT DOMAIN 44 124 416 IPR040324 -
Amo10g2012 661 PANTHER WD REPEAT DOMAIN 44 442 661 IPR040324 -
Amo10g2012 661 Pfam WD domain, G-beta repeat 306 342 IPR001680 GO:0005515
Amo10g2012 661 Pfam WD domain, G-beta repeat 187 218 IPR001680 GO:0005515
Amo10g2012 661 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Amo10g2012 661 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Amo10g2012 661 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 302 - -
Amo10g2012 661 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 220 - -
Amo10g2012 661 SMART WD40_4 607 653 IPR001680 GO:0005515
Amo10g2012 661 SMART WD40_4 345 384 IPR001680 GO:0005515
Amo10g2012 661 SMART WD40_4 304 343 IPR001680 GO:0005515
Amo10g2012 661 SMART WD40_4 180 219 IPR001680 GO:0005515
Amo10g2012 661 SMART WD40_4 467 508 IPR001680 GO:0005515
Amo10g2012 661 SMART WD40_4 263 301 IPR001680 GO:0005515
Amo10g2012 661 SUPERFAMILY WD40 repeat-like 185 651 IPR036322 GO:0005515
Amo10g2012 661 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Amo10g2012 661 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 310 IPR001680 GO:0005515
Amo10g2012 661 Gene3D - 179 543 IPR015943 GO:0005515
Amo10g2012 661 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 442 661 - -
Amo10g2012 661 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 21 99 - -
Amo10g2012 661 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 124 416 - -
Amo10g2012 661 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 345 - -
Amo10g2012 661 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Amo10g2012 661 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Amo10g2012 661 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2012 Amo-Chr10 72885076 72888852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2012 176 383 Miscellaneous Gene Families AT5G08390 21.127 3.02e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2012 K20241 - gmx:100801576 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2012 10 72885076 72888852 Amo20g2521 20 118556398 118560095 hybridization