Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2478 ATGGGTGCTGTATGTTATTATGTTGCTGCTGCTTTGCACTCGTTTATTTCTTGTTTCTCATTATTCATGCAAAGGGCAAGTAGTTCGCATCACGTGCACCGTAACCTTACCGATGGATTCACTCAACTTCCATTGGACCACAAAGACATTGAAATTCAGAGGCCTTATGATGTACCGGAGAGTGCACGTTACAGCTTTGTAAATGGAGTGCACAAGATGTGGGTGTACTCTAGCGACAAACCTCACTCCAAAAATAGCAGAACCAATCCCCGAACTGAACTCGCCATCAAAGGCTATGATTATTCATCAGGAGTGCGGCAATTTGAAGCGCAGGGTTTTGTGCCACGCGACACTTCTGGGGTGTGCGTTATGCAAATTTTCGGAGCATCCCATCTTCGTGCCACCACTCTCATGATTACAACCAACAAAGGGTCTCTTTCATATTATAGGAGTCCAGTGCTGGCTCCAAACATATGGAACAGATGGTTTAAATTAAATGTGATACATGACGTTGATGCCTCTACCGTGAAGATTTACATCGATGGGATTTTTAATGATGCTTCCCACTATATGGAATCACGTTGGAAGGGAATCAAGAGTTGTTGCTGGAGACGGGATAACAATAATGATGAGAAGCATTGGCCGCGGGGATATGATGACGGCGGTGGTAGTCATTGA 678 0.4454 MGAVCYYVAAALHSFISCFSLFMQRASSSHHVHRNLTDGFTQLPLDHKDIEIQRPYDVPESARYSFVNGVHKMWVYSSDKPHSKNSRTNPRTELAIKGYDYSSGVRQFEAQGFVPRDTSGVCVMQIFGASHLRATTLMITTNKGSLSYYRSPVLAPNIWNRWFKLNVIHDVDASTVKIYIDGIFNDASHYMESRWKGIKSCCWRRDNNNDEKHWPRGYDDGGGSH* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2478 225 SUPERFAMILY Concanavalin A-like lectins/glucanases 44 183 IPR013320 -
Amo20g2478 225 PANTHER BINDING PROTEIN, PUTATIVE, EXPRESSED-RELATED 18 185 - -
Amo20g2478 225 PANTHER CITRATE-BINDING PROTEIN-LIKE 18 185 - -
Amo20g2478 225 Pfam Alginate lyase 51 195 IPR014895 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2478 Amo-Chr20 116006598 116008086 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2478 - - zju:107425510 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2478 20 116006598 116008086 Amo20g2478 20 116006598 116008086 ECH
Amo10g1957 10 70470770 70472496 Amo20g2478 20 116006598 116008086 hybridization