Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2441 ATGGTCATGGGAAACTCGGGGAATTTAGATGCGGCCATAGAGAAGTTGTTGAATGAAGAGAAGCATGGGAGGCTCGCCGGGGACGTTGCCGTCACAAGGAAGGCCGTCACCGATATTCTCCGGCTCTGCCTTGAGGCGCGAGACTGGAAAACTCTCAACGACCAGATTGTTCTCTTGTCCAAACGACGTGGTCAGCTTAAGCAGGCTGTCACAGTAATGGTCCAGCAGGCAATGCAATATATTGATGAAACACCAGATATTGAAACACGTATAGAACTCATCAAAACCTTGAACAGTGTATCTGCAGGGAAGATATATGTTGAGATTGAGAGAGCTCGATTGGTCAAAAAACTTGCCAAGATTAAGGAGGAACAAGGGCTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAGTTCGTTTGTGCCTAGACCGTCAAGATTATGTTCGTGCACAAATACTTTCAAGAAAAATTAGTACGAGAGTATTTGATGCTGATGCTTCAAAGGAAAAGAAAAAACCTAAAGAAGGTGATAGTGTTGTTGAAGAAGCTCCTGCTGATATACCATCTCTGCCAGAGTTGAAGCGGATGTATTACGAATTAATGATTCGGTATTATTCCCACAAAAATGATTATCTTGAAATTTGTCGTTGCTACAAGGCAATATACGAAATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCAATCCTGAGGAAAATATGTTGGCACTTGGTTCTAGCACCACATGATCCAATGCAATCAAGTCTTCTCAATTCCACCTTGGAGGATAAGAATCTGTCTGAGATTCCAAACTTTAAGTATGTCTTCCTTATTTTGTTCTTCCATGCTATCCTGCTACAGGTTTCTGTTTATCATTTCCTTGTAATCGAGTGCTTATCTTTTATGGTATGCCATAGATTACTGTTGAAACAGTTGGTCACCATGGAGGTTATTCAATGGACAAGCCTTTGGGATGCATACAAGAATGAGTTTGAAAATGAAAAGAATCTTGGAAAGTCTTTGGGTGAAAAAGCAGCAGAAGATCTGAAGGAAAGAATAATTGAACATAATATTATTGTCGTATCAAAGTACTATGCAAGGATTACTTTGAAGAGACTTGCAGAGCTTTTGTGTCTCAGTGTTCAGGAAGCTGAAAAGCATCTGTCAGACATGGTTGTGTCCAAGGCACTGGTTGCAAAGATTGATAGGCCCATCGGAATAGTTTGTTTCCAGACTGCTAAGGATAGCAATGACATTCTCAACTCATGGGCAGCAAACTTGGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATCAGATACACAAAGAAACTATGATTCATAAAGCTGCTTTGAAGGCTTAA 1431 0.406 MVMGNSGNLDAAIEKLLNEEKHGRLAGDVAVTRKAVTDILRLCLEARDWKTLNDQIVLLSKRRGQLKQAVTVMVQQAMQYIDETPDIETRIELIKTLNSVSAGKIYVEIERARLVKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADASKEKKKPKEGDSVVEEAPADIPSLPELKRMYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENPAEWIPILRKICWHLVLAPHDPMQSSLLNSTLEDKNLSEIPNFKYVFLILFFHAILLQVSVYHFLVIECLSFMVCHRLLLKQLVTMEVIQWTSLWDAYKNEFENEKNLGKSLGEKAAEDLKERIIEHNIIVVSKYYARITLKRLAELLCLSVQEAEKHLSDMVVSKALVAKIDRPIGIVCFQTAKDSNDILNSWAANLEKLLDLVEKSCHQIHKETMIHKAALKA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2441 476 ProSiteProfiles PCI domain profile. 234 437 IPR000717 -
Amo20g2441 476 Pfam PCI domain 330 433 IPR000717 -
Amo20g2441 476 SUPERFAMILY "Winged helix" DNA-binding domain 364 442 IPR036390 -
Amo20g2441 476 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 439 471 IPR040896 -
Amo20g2441 476 Gene3D - 362 441 IPR036388 -
Amo20g2441 476 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 314 476 IPR040134 -
Amo20g2441 476 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 5 302 IPR040134 -
Amo20g2441 476 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 HOMOLOG A-LIKE 5 302 - -
Amo20g2441 476 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 HOMOLOG A-LIKE 314 476 - -
Amo20g2441 476 SMART PINT_4 366 452 IPR000717 -
Amo20g2441 476 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 366 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2441 Amo-Chr20 114346997 114353601 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2441 K03035 - gmx:100793755 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1923 10 69642790 69649500 Amo20g2441 20 114346997 114353601 hybridization