Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1923 ATGGTCATGGGAAACTCGGGGAATTTAGATGCGGCCATAGAGAAGTTGTTGAATGAAGAGAAGCATGGGAGGCTCGCCGGGGACGTTGCCGTCACAAGGAAGGCCGTCACCGATATTCTCCGGCTCTGCCTTGAGGCGCGAGACTGGAAAACTCTCAACGACCAGATTGTTCTCTTGTCCAAACGACGTGGTCAGCTTAAGCAGGCTGTCACAGTAATGGTCCAGCAGGCAATGCAATATATTGATGAAACACCAGATATTGAAACACGTATAGAACTCATCAAAACCTTGAACAGTGTATCTGCAGGGAAGATATATGTTGAGATTGAGAGAGCTCGYTTGGTCAAYAAACTTGCCAAGATTAAGGAGGAACAAGGGCTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAGTTCGTTTGTGCCTAGACCGTCAAGATTATGTTCGTGCACAAATACTTTCAAGAAAAATTAGTACGAGAGTATTTGATGCTGATGCTTCAAAGGAAAAGAAAAAACCTAAAGAAGGTGATAGTGTTGTTGAAGAAGCTCCTGCTGATATACCATCTCTGCCAGAGTTGAAGCGGATGTATTACGAATTAATGATTCGGTATTATTCCCACAAAAATGATTATCTTGAAATTTGTCGTTGCTACAAGGCAATATACGAAATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCAATCCTGAGGAAAATATGTTGGCACTTGGTTCTAGCACCACATGATCCAATGCAATCAAGTCTTCTCAATTCCACCTTGGAGGATAAGAATCTGTCTGAGATTCCAAACTTTAAATTACTGTTGAAACAGTTGGTCACCATGGAGGTTATTCAATGGACAAGCCTTTGGGATGCATACAAGAATGAGTTTGAAAATGAYAAGAATCTTGGAAAGTCTTTGGGTGAAAAAGCAGCAGAAGATCTGAAGGAAAGAATAATTGAACATAATATTATTGTCGTATCAAAGTACTATGCAAGGATTACTTTGAAGAGACTTGCAGAGCTTTTGTGTCTCAGTGTTCAGGAAGCTGAAAAGCATCTGTCAGACATGGTTGTGTCCAAGGCACTGGTTGCAAAGATTGATAGGCCCACCGGAATAGTTTGTTTCCAGACTGCTAAGGATAGCAATGACATTCTCAACTCATGGGCAGCAAACTTAGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATCAGATACACAAAGAAACTATGATTCATAAAGCTGCTTTGAAGGCTTAA 1332 0.4092 MVMGNSGNLDAAIEKLLNEEKHGRLAGDVAVTRKAVTDILRLCLEARDWKTLNDQIVLLSKRRGQLKQAVTVMVQQAMQYIDETPDIETRIELIKTLNSVSAGKIYVEIERARLVNKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADASKEKKKPKEGDSVVEEAPADIPSLPELKRMYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENPAEWIPILRKICWHLVLAPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTSLWDAYKNEFENDKNLGKSLGEKAAEDLKERIIEHNIIVVSKYYARITLKRLAELLCLSVQEAEKHLSDMVVSKALVAKIDRPTGIVCFQTAKDSNDILNSWAANLEKLLDLVEKSCHQIHKETMIHKAALKA* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1923 443 ProSiteProfiles PCI domain profile. 234 404 IPR000717 -
Amo10g1923 443 Gene3D - 329 408 IPR036388 -
Amo10g1923 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 5 443 IPR040134 -
Amo10g1923 443 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 333 419 - -
Amo10g1923 443 SUPERFAMILY "Winged helix" DNA-binding domain 331 409 IPR036390 -
Amo10g1923 443 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 406 438 IPR040896 -
Amo10g1923 443 SMART PINT_4 333 419 IPR000717 -
Amo10g1923 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 HOMOLOG A-LIKE 5 443 - -
Amo10g1923 443 Pfam PCI domain 292 400 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1923 Amo-Chr10 69642790 69649500 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1923 K03035 - gmx:100793755 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1923 10 69642790 69649500 Amo20g2441 20 114346997 114353601 hybridization