Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1601 ATGGAGGACAGGAGCGTGAGGAGGACGCGCCAGGTGGACGTGGTGATGGACTGCGTGATTCCGTACATCGATGACCCGAAAGACCGCGACGCCGTGTCTCAGGTGTGTCGGCGGTGGTACGAGCTCGATTCCATGACACGTAAGCACGTCACCATCGCGCTATGCTACACAACCACGCCGGACCGCCTCAGGCGGCGGTTCCCTCACCTGGAGTCTCTGAAGCTGAAGGGGAAGCCTAGGGCGGCGATGTTCAACCTCATACCGGAGGATTGGGGCGGTCACGTGACGCCTTGGGTGACGGAGATCTCGCAGCACTTTGGATGCCTCAGGAGCCTCCATTTCCGGCGCATGATTGTTAAGGACTCCGATCTTGAGGTTCTTGCTAAGTCACGTGGTCACGTGCTTCAAGCTCTGAAGCTTGATAAGTGTTCTGGTTTCTCCACAGATGGCCTTTTCTTTGTTGGCAGGTTTTGCAGGAATTTAAGAGTCTTGTTTTTGGAGGAAAGCACAATTGTTGAGAAAGATGGTGAATGGTTGCATGAGCTTGCTTCAAATAATACGGTTCTTGAGTCACTCAATTTTTACTTGACGGAAATTGCGGCTGTAGGAATTCAGGACCTTGAACTTATAGCCAAAAATTGCCCCAACTTAGTCTCCGTGAAAGTTACTGATTCCGAAATCTTGGATCTTGTGAACTTCTTTCGCTATGCTACTTCTCTAGAAGAATTTTGTGGAGGTGCCTATACTGAGGAACCAGATAGGTACAATGCTGTAACATTACCAGCCAGGTTATGCCGATTGGGTTTGACAAATATTGAAAGCAATGAGTTGCCAATGGTGTTTGTTTATGCATCCATACTAAAAAAGTTGGACCTCATGTATGCAATGCTGGATACAGAGGATCATTGCAAGTTAATTGAAAAGTGCCCCAATTTGGAAGTCCTCGAGTCAAGAAATGTAATTGGAGATAGAGGATTGGAGGTTCTTGCTCGCTGTTGTACAAAGTTAAAAAGGCTTAGGATTGATAGAGGTGATGATGATCAAGGAATGGAAGATGAAGATGGTGTTGTTTCCCATAGAGGATTAACTGCTTTGGCACAGGGATGTCCAAAACTCGAATATTTGGCTGTTTATGTATCTGACATCACAAATGCATGTTTGGAACAGATTGGAACTCACTTGAGAAACCTTTGTGATTTTCGCCTTGTCCTGCTTGATCATGAAGCAGAAATAACCGATTTGCCACTTGACAATGGAGTAAGGACTTTACTTATGGGTTGTGACAAGCTTAGAAGATTTGCTCTTTATCTCCGACCCGGGGGCTTGACTGACCAGGGTCTTGGCTACATTGGGCAATACAGCCAAAATGTAAGATGGATGCTACTTGGCTATGTTGGACAGTCCGATGCAGGGCTTTTGGAATTCTCTAAGGGCTGTCCGAATCTCCAGAAACTCGAAATGAGAGGCTGTTCCTTTTTTAGTGAGCGTGCACTAGCCATTGCTGCAATGCGCCTGGCTTCTCTTAGGTACTTGTGGGTGCAAGGCTATGGTGCCTCTCCTTCTGGACGCGATCTTTTGGCTATGGCTCGCCCCTTTTGGAATATCGAGTTGATTCCTTCTAGACACGTGGCGGTAAATAATAATCCGGAAATGCCAGTAATCATTGAGCATCCGGCTCACATTCTTGCATATTACTCTCTTGCGGGGCAAAGAGATGATTTTCCGGATAGCGTTGTACCTTTGGAATCCACGGGAAACAAAGTGATATGA 1770 0.4672 MEDRSVRRTRQVDVVMDCVIPYIDDPKDRDAVSQVCRRWYELDSMTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVTEISQHFGCLRSLHFRRMIVKDSDLEVLAKSRGHVLQALKLDKCSGFSTDGLFFVGRFCRNLRVLFLEESTIVEKDGEWLHELASNNTVLESLNFYLTEIAAVGIQDLELIAKNCPNLVSVKVTDSEILDLVNFFRYATSLEEFCGGAYTEEPDRYNAVTLPARLCRLGLTNIESNELPMVFVYASILKKLDLMYAMLDTEDHCKLIEKCPNLEVLESRNVIGDRGLEVLARCCTKLKRLRIDRGDDDQGMEDEDGVVSHRGLTALAQGCPKLEYLAVYVSDITNACLEQIGTHLRNLCDFRLVLLDHEAEITDLPLDNGVRTLLMGCDKLRRFALYLRPGGLTDQGLGYIGQYSQNVRWMLLGYVGQSDAGLLEFSKGCPNLQKLEMRGCSFFSERALAIAAMRLASLRYLWVQGYGASPSGRDLLAMARPFWNIELIPSRHVAVNNNPEMPVIIEHPAHILAYYSLAGQRDDFPDSVVPLESTGNKVI* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1601 589 SMART LRR_CC_2 309 332 IPR006553 -
Amo20g1601 589 SMART LRR_CC_2 427 453 IPR006553 -
Amo20g1601 589 SMART LRR_CC_2 479 504 IPR006553 -
Amo20g1601 589 SMART LRR_CC_2 369 393 IPR006553 -
Amo20g1601 589 Gene3D Ribonuclease Inhibitor 48 585 IPR032675 -
Amo20g1601 589 SUPERFAMILY RNI-like 98 526 - -
Amo20g1601 589 Pfam Transport inhibitor response 1 protein domain 68 114 IPR041101 -
Amo20g1601 589 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 11 584 - -
Amo20g1601 589 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 11 584 - -
Amo20g1601 589 Pfam F-box 11 49 IPR041567 -
Amo20g1601 589 Gene3D - 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1601 Amo-Chr20 44374983 44379277 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1601 K13463 - gmx:732662 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1601 20 44374983 44379277 Amo10g1118 10 23465213 23468949 hybridization