Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1568 ATGGTTGATTTGCATTGGAAAACAAACATGGTCAACTCCGACATGTCATCAAATTCTCCAAAACTTTCTAAGCCCTCACAGTCACCGCGCGGTCCCTCTCTGCATGTTCCATTCCCCACCACAACAGACTTCTCCCCCGCACCTCCTCCGCTCTGTGCCGCCTACGACCAATACCTCCGCCTCCCGGACCTCCGAAAACTGTGGTCCCACAGAGACTTCCCAACCTGGAACAACGAGCCAATCCTAAAACCCGCTTTGCAAGCTCTTGAAATCTCGTTCCGGTTCCTCTCCACTGTGTCATCGGATCCAAGACCTTACGCAAACCTAAGAGAATGGAACCGTAAGATTGAGTCACTCGCCACGTGTCAGATCGAGATCATATCTATTCTCTGCGACGACGAGGAGCAAGACACGGAAACACGTGGCACCGCACCAACCGCTAATCTCGCAGAATCCGGTAACAGAATTAGTTACAGCGAGTCCAGCCTGCTCCCGAGACTCGCCACGTGGCGGAGATCGAAGGACGCAGCTCAGAGGATCCTCCTCACCGTGGAGTGCCAGATGACAAGGTGTCCGTACACTTTGGGCCTAGGTGAGCCCAATCTCTCGGGAAAGCCCAGTCTCCTTTACGATGCGGTTTGCAGGCCCAGAGAACTCCACACGCTCCAGGCGACGCCGTTGGAGGGGAACTACGAGAACGTGAACGTTCATGCGGCGCACCAGATCTTGGAATCGTGGATCCGCGTAATGCAGAAGCTTCTCGAACGAATTGCTGGATCAATCGAAGGGAGGAAGTTCGAGAAGGCCGCGAGTGATCTCGACGCGGTGGAGCGGATCTGGAAGCTTCTGGAAGAAGTTATGGATGTCCACATGGCTATGGATCCTAACGATTTCTTGAAACTGATGAAGAGCCAGCTGGCAATGAGGTCGTTGAAAAACGGTTGCGTCGGCGAAACGGTGCCGTTTTGTTTCCGGTCGAGGGAGTTGGTTGAGGTGGCGAGGATGTGTAAGGAGCTGAGGGAGAAGGTGCCGGAAGTAGTCGGAGCGGAGGCGGATCCAACGGGAGGGCCGAGGATTCAGGAGGCAGCGATGAGGCTTTACGCGGCGGCGGCGGAGGAGGAGAGGGAGAAGGTGGAGGTGCTGCAAGGGATGCAGGCGGTGGAGAAGGCTATGAAGGGGTTCTTTTATGGATACAAGCAGATGGTGGCGGCGGTTATGGGGAACGTGGAGGCGACTGGGAACCGAGTTGGGATGGGTTGCGAGGGTGGTGACTCATTGACTCAGATATTTATGGAGCCTACTTATTTTCCAAGCTTGGACGCCGCCAAAACTTTCTTGGGGTACTTTTGGGATAACAAAACTAACAACAATAATAACGATCATGGTAAACGTGTTAATAGTTTTGTTGCCGATAGAAGGATTCGATGCTAG 1431 0.5374 MVDLHWKTNMVNSDMSSNSPKLSKPSQSPRGPSLHVPFPTTTDFSPAPPPLCAAYDQYLRLPDLRKLWSHRDFPTWNNEPILKPALQALEISFRFLSTVSSDPRPYANLREWNRKIESLATCQIEIISILCDDEEQDTETRGTAPTANLAESGNRISYSESSLLPRLATWRRSKDAAQRILLTVECQMTRCPYTLGLGEPNLSGKPSLLYDAVCRPRELHTLQATPLEGNYENVNVHAAHQILESWIRVMQKLLERIAGSIEGRKFEKAASDLDAVERIWKLLEEVMDVHMAMDPNDFLKLMKSQLAMRSLKNGCVGETVPFCFRSRELVEVARMCKELREKVPEVVGAEADPTGGPRIQEAAMRLYAAAAEEEREKVEVLQGMQAVEKAMKGFFYGYKQMVAAVMGNVEATGNRVGMGCEGGDSLTQIFMEPTYFPSLDAAKTFLGYFWDNKTNNNNNDHGKRVNSFVADRRIRC* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1568 476 MobiDBLite consensus disorder prediction 1 40 - -
Amo20g1568 476 Pfam Hs1pro-1 protein C-terminus 188 452 IPR009743 -
Amo20g1568 476 Pfam Hs1pro-1 N-terminus 1 185 IPR009869 GO:0006952
Amo20g1568 476 MobiDBLite consensus disorder prediction 9 40 - -
Amo20g1568 476 Gene3D - 208 310 - -
Amo20g1568 476 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 210 446 IPR037217 GO:0019441|GO:0020037|GO:0046872
Amo20g1568 476 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 1 460 IPR038759 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1568 Amo-Chr20 40815908 40817735 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1568 - - gsj:114396435 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1568 20 40815908 40817735 Amo20g1568 20 40815908 40817735 ECH
Amo20g1568 20 40815908 40817735 Amo10g1089 10 22052932 22054777 hybridization