Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1263 ATGAAGCCAGCTCAGTGGGTTTCAGAGCATAAGCTCACTACCATTGGGGCACTGTGGGCGACAGGTGTTGGAGCATCACTGATGGCATATGCACGCACAAAGTCTCGTATGAAACCAAGCCTCAGGCTTATCCATGCCAGGTTGAATGCACAGGCTTTGACTCTAGCAGTTCTATCAGGTGCAGCTGCATATCACTACTACGCTAATATTAATAACGATCAGAATCGTTCTGTTGATGAGGATATTCGAATTAGACCATCTTCTTCACCCAATGTTAAAGACTTCGTTGAATGGGACCTACATTCTCCTTTCTAA 315 0.4508 MKPAQWVSEHKLTTIGALWATGVGASLMAYARTKSRMKPSLRLIHARLNAQALTLAVLSGAAAYHYYANINNDQNRSVDEDIRIRPSSSPNVKDFVEWDLHSPF* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1263 104 Gene3D - 12 72 - -
Amo20g1263 104 PANTHER RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL 2 77 - -
Amo20g1263 104 PANTHER RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL 2 77 IPR040153 -
Amo20g1263 104 Pfam Hypoxia induced protein conserved region 9 60 IPR007667 -
Amo20g1263 104 ProSiteProfiles HIG1 domain profile. 1 76 IPR007667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1263 Amo-Chr20 26452518 26453112 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1263 - - aip:107608949 115.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1263 20 26452518 26453112 Amo10g0837 10 13358646 13359212 hybridization
Amo20g1263 20 26452518 26453112 Amo17g0201 17 2928858 2929532 PCT
Amo17g0201 17 2928858 2929532 Amo20g1263 20 26452518 26453112 PCT