Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1220 ATGCGGACACGGTCGGTAGTTGCTATTCTGTTACTCTCCTCGTTATTGCTGATGCTCTCTCCAACGGCTTTCCCAATGCCGTTGCAACCGTCCACCTTCTCGGCCAAGCTGATTCACCGTTTCTCCCGAGAACTGAACCTAGTTCGCCACCGGTCCCGTTCGGTTCCGGACCGGCGAACCATTCTCTATTACCAGATGCTTCTACAAAGTGATAAGATCAGGCTCGGCGCTCGCCAGCTCCTCTTTCCTTCTCGCGGTGCCAAAACGATGGCACCCGGCAACGACTTCGGCTGGTTGCATTACACTTGGATTGATATAGGGACACCGAGTATTTCGTTTTTAGTGGCATTGGATGCCGGGAGTGATCTGTTATGGGTTCCATGTGATTGCATACAGTGCGCTCCCTTGTCTGCCAGTTACTATGCCCCTCTGGATAGAGATCTGAATGAGTATAGTCCTTCTCGTTCAAGATCCAGCAAGCCTCTGTCTTGCAGCCATCAGTTATGTGATCCGGGTTCAAACTGTAAGAGTTCCAAGCAGCAGTGTCCATACACAATCAATTACGTATCAGAAAATACATCGAGTTCTGGATTGTTGGTTGAGGACATATTGCATCTTCAATCAGGAGGTGGCGGTAGTGCTGGCGGATCTAACACTTCTGTTCAGGCTTCGGTTGTTATCGGGTGTGGTATGAAGCAGAGTGGCGGGTATTTAGATGGGATAGCTCCGGATGGCCTCATGGGTTTGGGACCTGGGGAGAGTTCAGTTCCAAGTATTCTTGCAAAATCAGGACTAATCCATGATTCTTTTTCCTTATGTTTTAATGCTGATGGTTCTGGTCGCATGTTTTTTGGGGACCAGGGATCATCCATCCAACAACAGTCTACTTCATTCTTGCCATTCAATGGAATATATTCAACATACATTATTGGAGTGGAGACATGTTGTATTGGGAATTCTTGTCTCAAAATGACAAGTTTTAAAGCACAGGTTGATAGTGGAACATCATTTACATTTCTTCCTGGGCATGTGTATGAATCCATAGCAGAGGAGTTTGATAAAAAGGTAAATGCTTCAAGAGCTACTTTCAAAGATACTCCCTGGGAGTATTGTTATGCTTCCAGTTCACAAGACTTGCCAAAGATTCCCACCTTAACACTCATGTTCCAGCAGAATAACAGCTTTGTGGTCTATAATCCTGTGTTTGTATTCAATGTCAATCAGAAAACAACTGCATTTTGTTTAGCCATAGAGCCAGCTGAAGGGGATATGGGAACAATAGGACAGAACTTCATGACGGGATATCGGTTGGTATTTGATCAAGAAAACAAGAAGTTAGCATGGTCACGGTCAAATTGTAAGGATCTCAATCTAGGTAAGGCAATGCCCCTTTCGCCTCCAAACGAGACAGCCTCGAACCCATTACCGGCAGATGAGCAGCAGAGAACTAAGGGGAATGCGGTTGCCCCAGCTGTTGCCGGAACAGCTCCTCGCAAACCTTCTGGTGCTACGTCTTTGACGATCTCATGCCGGCATCATTGGCACTGTTATTTGTTTCTTCTATTCCAACTTCTAGTAGCCTTCTTATGA 1590 0.4604 MRTRSVVAILLLSSLLLMLSPTAFPMPLQPSTFSAKLIHRFSRELNLVRHRSRSVPDRRTILYYQMLLQSDKIRLGARQLLFPSRGAKTMAPGNDFGWLHYTWIDIGTPSISFLVALDAGSDLLWVPCDCIQCAPLSASYYAPLDRDLNEYSPSRSRSSKPLSCSHQLCDPGSNCKSSKQQCPYTINYVSENTSSSGLLVEDILHLQSGGGGSAGGSNTSVQASVVIGCGMKQSGGYLDGIAPDGLMGLGPGESSVPSILAKSGLIHDSFSLCFNADGSGRMFFGDQGSSIQQQSTSFLPFNGIYSTYIIGVETCCIGNSCLKMTSFKAQVDSGTSFTFLPGHVYESIAEEFDKKVNASRATFKDTPWEYCYASSSQDLPKIPTLTLMFQQNNSFVVYNPVFVFNVNQKTTAFCLAIEPAEGDMGTIGQNFMTGYRLVFDQENKKLAWSRSNCKDLNLGKAMPLSPPNETASNPLPADEQQRTKGNAVAPAVAGTAPRKPSGATSLTISCRHHWHCYLFLLFQLLVAFL* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1220 529 Gene3D Acid Proteases 89 286 IPR021109 -
Amo20g1220 529 PANTHER ASPARTYL PROTEASES 16 470 IPR001461 GO:0004190|GO:0006508
Amo20g1220 529 Gene3D Acid Proteases 288 455 IPR021109 -
Amo20g1220 529 PRINTS Pepsin (A1) aspartic protease family signature 106 126 IPR001461 GO:0004190|GO:0006508
Amo20g1220 529 PRINTS Pepsin (A1) aspartic protease family signature 329 340 IPR001461 GO:0004190|GO:0006508
Amo20g1220 529 PRINTS Pepsin (A1) aspartic protease family signature 425 440 IPR001461 GO:0004190|GO:0006508
Amo20g1220 529 MobiDBLite consensus disorder prediction 466 480 - -
Amo20g1220 529 PANTHER ASPARTIC PROTEINASE-LIKE PROTEIN 1 16 470 - -
Amo20g1220 529 SUPERFAMILY Acid proteases 96 454 IPR021109 -
Amo20g1220 529 Pfam Xylanase inhibitor N-terminal 101 286 IPR032861 -
Amo20g1220 529 MobiDBLite consensus disorder prediction 463 500 - -
Amo20g1220 529 Pfam Xylanase inhibitor C-terminal 327 449 IPR032799 -
Amo20g1220 529 ProSiteProfiles Peptidase family A1 domain profile. 100 449 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1220 Amo-Chr20 24495431 24499032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1220 93 456 Miscellaneous Gene Families AT1G44130 25.840 8.91e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1220 - - gmx:100782209 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1220 20 24495431 24499032 Amo10g0793 10 12070561 12074293 hybridization