Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0793 ATGCGGACACGGTCGGTAGTTGCTATTCTGTTACTCTCCTCGTTATTGCTGATGCTCTCTCCAACGGCTTTCCCAATGCCGTTGCAACCGTCCACCTTCTCGGCCAAGCTGATTCACCGTTTCTCCCGAGAACTGAACCTAGTTCGCCACCGGTCCCGTTCGGTTCCGGACCGGCGAACCATTCTCTATTACCAGATGCTTCTACAAAGTGATAAGATCAGGCTCGGCGCTCGCCAGCTCCTCTTTCCTTCTCGCGGTGCCAAAACGATGGCACCCGGCAACGACTTCGGCTGGTTGCATTACACTTGGATTGATATAGGGACACCGAGTATTTCGTTTTTAGTGGCATTGGATGCCGGGAGTGATCTGTTATGGGTTCCATGTGATTGCATACAGTGCGCTCCCTTGTCTGCCAGTTACTATGCCCCTCTGGATGCCAATCATGACAATTCCCCTAGTGTTAATCTCACAGTAATATCAGTCAAGATCTCCGGTCAAAAGACGAAAGTGTTTAATGTTAAATATAACTCCATTTTCAATGAAGTTAGAGGGTGCTCCCTCATGTTTGGGGCATCTATTATGCAGGATAGAGATCTGAATGAGTATAGTCCTTCTCGTTCAAGATCCAGCAAGCCTCTGTCTTGCAGCCATCAGTTATGTGATCTGGGTTCAAACTGTAAGAGTTCCAAGCAGCAGTGTCCATACACAATCAATTACGTATCAGAAAATACATCGAGTTCTGGATTGTTGGTTGAGGACATATTGCATCTTCAATCAGGAGGTGGTGGTAGTGCTGGCGGATCTAACACTTCTGTTCAGGCTTCGGTTGTTATCGGGTGTGGTATGAAGCAGAGTGGCGGGTATTTAGATGGGATAGCTCCGGATGGCCTCATGGGTTTGGGACCTGGGGAGAGTTCAGTTCCAAGTATTCTTGCAAAATCAGGACTAATCCATGATTCTTTTTCCTTATGTTTTAATGCTGATGGTTCTGGTCGCATGTTTTTTGGGGACCAGGGATCATCCATCCAACAACAGTCTACTTCATTCTTGCCATTCGATGGAATATATTCAACCTACATTATTGGAGTGGAGACATGTTGTATTGGGAATTCTTGTCTCAAAATGACAAGTTTTAAAGCACAGGTTGATAGTGGAACATCATTTACATTTCTTCCTGGGCATGTGTATGAATCCATAGCAGAGGAGTTTGATAAAAAGCTAAATGCCTCAAGAGCTACCTTCAAAGATACTCCCTGGGAGTATTGTTATGCTTCCAGTTCACAAGACTTGCCAAAGATTCCCACCTTAACACTCATGTTCCAGCAGAATAACAGCTTTGTGGTCTATAATCCTGTGTTTGTATTCAATGTCGATCAGAAAACAACTGCATTTTGTTTAGCCATAGAGCCAGCTGAAGGGGATATGGGAACAATAGGACAGAACTTCATGACGGGATATCGGTTGGTATTTGATCAAGAAAACAAGAAGTTAGCATGGTCACGGTCAAATTGTAAGGATCTCAATCTAGGTAAGGCAATGCCCCTTTCGCCTCCAAACGAGACAGCCTCGAACCCATTACCGGCAGATGAGCAGCAGAGAACTAAGGGGAATGCGGTTGCCCCAGCTGTTGCCGGAACAGCTCCTCGCAAACCTTCTGGTGCTACGTCTTTGACGATTTCATGCCGGCATCATTGGCACTGTTATTTGTTTCTTCTATTCCAACTTCTAGTAGCCTTCTTATGA 1743 0.455 MRTRSVVAILLLSSLLLMLSPTAFPMPLQPSTFSAKLIHRFSRELNLVRHRSRSVPDRRTILYYQMLLQSDKIRLGARQLLFPSRGAKTMAPGNDFGWLHYTWIDIGTPSISFLVALDAGSDLLWVPCDCIQCAPLSASYYAPLDANHDNSPSVNLTVISVKISGQKTKVFNVKYNSIFNEVRGCSLMFGASIMQDRDLNEYSPSRSRSSKPLSCSHQLCDLGSNCKSSKQQCPYTINYVSENTSSSGLLVEDILHLQSGGGGSAGGSNTSVQASVVIGCGMKQSGGYLDGIAPDGLMGLGPGESSVPSILAKSGLIHDSFSLCFNADGSGRMFFGDQGSSIQQQSTSFLPFDGIYSTYIIGVETCCIGNSCLKMTSFKAQVDSGTSFTFLPGHVYESIAEEFDKKLNASRATFKDTPWEYCYASSSQDLPKIPTLTLMFQQNNSFVVYNPVFVFNVDQKTTAFCLAIEPAEGDMGTIGQNFMTGYRLVFDQENKKLAWSRSNCKDLNLGKAMPLSPPNETASNPLPADEQQRTKGNAVAPAVAGTAPRKPSGATSLTISCRHHWHCYLFLLFQLLVAFL* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0793 580 PANTHER ASPARTIC PROTEINASE-LIKE PROTEIN 1 16 520 - -
Amo10g0793 580 PANTHER ASPARTYL PROTEASES 16 520 IPR001461 GO:0004190|GO:0006508
Amo10g0793 580 MobiDBLite consensus disorder prediction 517 531 - -
Amo10g0793 580 Pfam Xylanase inhibitor C-terminal 378 500 IPR032799 -
Amo10g0793 580 MobiDBLite consensus disorder prediction 514 551 - -
Amo10g0793 580 ProSiteProfiles Peptidase family A1 domain profile. 100 500 IPR033121 -
Amo10g0793 580 Gene3D Acid Proteases 89 337 IPR021109 -
Amo10g0793 580 Pfam Xylanase inhibitor N-terminal 101 337 IPR032861 -
Amo10g0793 580 PRINTS Pepsin (A1) aspartic protease family signature 476 491 IPR001461 GO:0004190|GO:0006508
Amo10g0793 580 PRINTS Pepsin (A1) aspartic protease family signature 106 126 IPR001461 GO:0004190|GO:0006508
Amo10g0793 580 PRINTS Pepsin (A1) aspartic protease family signature 380 391 IPR001461 GO:0004190|GO:0006508
Amo10g0793 580 Gene3D Acid Proteases 339 506 IPR021109 -
Amo10g0793 580 SUPERFAMILY Acid proteases 96 505 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0793 Amo-Chr10 12070561 12074293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0793 213 507 Miscellaneous Gene Families AT1G44130 25.157 8.01e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0793 - - gmx:100782209 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1220 20 24495431 24499032 Amo10g0793 10 12070561 12074293 hybridization