Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1140 ATGGGAAAGAAGCAATCTTTGCGTAGCAAAGCTACCCAGATTGTATCTGTTATCCTGAATCCAATATCTGACTCTGACACTCTCAAACACCCTCCTCCAACACCTTCTGATGAGGTAGGGGGATTAGGAGGAACAACAAGTGAATCAGAGAAAACTGAAGAGCGTAGCAATGATTTAGTTGATGGCCCTGATACCTCATCTTTCAGTGCATTTCTATATTCTTTCTTGTCTTCATCAGATGCTGGAGGAGATAATGCAAAGGTRCATGGACAGAGTGATGGTAAAGGTGCTTCAGGTGATGRTAATAACYCTTTACCCGATTCATCRTTGAAGGAGAATAATGGTGGAAAGAAAAGCTTGTTCTCTAGGAGTAAGCAATCACTTGGTAGAGTTATTCGCCAAGCCGCTAGGATCGGTGGATTTCGCCATCAGGGGCGRAAGGATAATAATTCYGAAATGAATTCTGATTGTCTAAATGGTTCTGGATTGAATGGTGTTGAGATGAATCATCTTTCAACTGTGAAAGGGAAAGAATCAGAGTCTGTGTCTTTGGTTGACATGCCAGAAATTTCTGAGCCGTCGATGCTCCTTTCAGACGCGATGAGAAGTACTCTCTATGCTTCTCTTCCTGCTCTTGTTCATGGAAGGAAGTGGCTGTTGCTGTACAGCACTTGGAGGAACGGTATATCACTTTCAACCCTTTATCGAAGAAGCATGCTTTGGCCTGGATTGAGTTTGCTGGTTGTCGGAGACCGAAGAGGAGCWGTGTTTGGAAGCTTAGTTGAAGCACCTCTTAGACCATCCAACAAGAAATACCAGGGAACAAACAGTACATTTGTTTTCACAAGTATTTCTGGCCATCCTGTTATATATCGTCCAACAGGGTTAAACCGCTATTTCACACTATGCAACACTGAGTTCTTAGCAATTGGAGGGGGAAGTCATTTTGCGCTTTATTTGGATGGTGATCTATTGAATGGCTCAAGCTCGGTCTCGGAAACCTACGGAAATCCTTGCCTTGCGAATTCTCAAGATTTCGAAGTGAAGGAAGTAGAGGTGCTCATGCAACTTCTTCGATTCTTCTCACTTGCACACAATTTATGGGGCTTTGTGTATGCTTCAAAATATGATGAAGTACTTGCATTTAGCAGAACAGAGGCACCTGGCATCTGTCGATGGTAA 1182 0.4289 MGKKQSLRSKATQIVSVILNPISDSDTLKHPPPTPSDEVGGLGGTTSESEKTEERSNDLVDGPDTSSFSAFLYSFLSSSDAGGDNAKVHGQSDGKGASGDXNNXLPDSSLKENNGGKKSLFSRSKQSLGRVIRQAARIGGFRHQGRKDNNSEMNSDCLNGSGLNGVEMNHLSTVKGKESESVSLVDMPEISEPSMLLSDAMRSTLYASLPALVHGRKWLLLYSTWRNGISLSTLYRRSMLWPGLSLLVVGDRRGAVFGSLVEAPLRPSNKKYQGTNSTFVFTSISGHPVIYRPTGLNRYFTLCNTEFLAIGGGSHFALYLDGDLLNGSSSVSETYGNPCLANSQDFEVKEVEVLMQLLRFFSLAHNLWGFVYASKYDEVLAFSRTEAPGICRW* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1140 393 MobiDBLite consensus disorder prediction 1 67 - -
Amo20g1140 393 MobiDBLite consensus disorder prediction 82 124 - -
Amo20g1140 393 MobiDBLite consensus disorder prediction 1 30 - -
Amo20g1140 393 MobiDBLite consensus disorder prediction 96 124 - -
Amo20g1140 393 PANTHER TLD-DOMAIN NUCLEOLAR PROTEIN 1 358 - -
Amo20g1140 393 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 358 - -
Amo20g1140 393 SMART 109ultra 194 356 IPR006571 -
Amo20g1140 393 Pfam TLD 220 353 IPR006571 -
Amo20g1140 393 ProSiteProfiles TLDc domain profile. 195 357 IPR006571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1140 Amo-Chr20 21776753 21779772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1140 217 374 EF-hand Containing Proteins AT5G06260 27.976 1.17e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1140 - - aip:107622578 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1140 20 21776753 21779772 Amo10g0701 10 8938617 8942062 hybridization