Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1046 ATGAGCAGTATGCTTCATGGGGTGTTGATTTTGGCAATGAAACATGACTGTGTATTTGGTGATGACTTGGATTTAAGTGAAATAAGCTATGTATCAGAGGTTCTAAGGAAGCTTGATCGCTCCATTGTATATTCCTTGTCTCCTGGAACTAGTGTGACCCCAGCCATGGCCAAGGATGTCATTGGACTGGTCAACATGTATCGTATTACAGGAGATGACTGGGATACATGGTGGGATGTAAAAGGTCACTTCAACGTAACGAGGGATTTTGCAACTGCTAATCTGATAGGAGCAACAGGCTTAAATGGGAAATCCTGGCCTGATTTGGACATGCTTCCATTTGGATGGCTAACAGATCCTGGTGTAAATGAAGGTCCACACAGGTATTGTAGACTCAATCTAGAAGAGCAAAAGACACAGATAACACTTTGGGCGATAGCAAAGTCTCCCCTAATGTATGGAGGGGACCTGCGAAAAATTGATCCTACAACATATGGCCTTATCACAAACCCTACCCTTCTGGAGATCAACTCTTTTAGCTCAAACAATATGGAGTTTCCTTATATCACAAGCTTGAGGAGTGAAGGTCAAGATCTTGGGGGGCAAATGAGAAGATATATCAAAGAAACAAAGACCTTATATACACATTCATTAGGTCTCACTAACTGCTCTGATCCGAAGGCAAGTGCTTGGACTAGTGAAACTGTTGACCAAGATGTTGAAAGGATCTGTTGGAAAGGGACTTTCAGAAACAAGCCTTTGGCAGCTTTCTGTGTAAACAAGAGAAAACTTCACTTCAAAATCATTGAAGAGAGTTTGTCCCAACTGAACCTTGGAAGGAAATATCATTTAGTTGCAACCAATAGAATAAAATTTTGCTTGGATGCTTCTCCTAGACGAAAGGTTACTTCTAACGAGTTCGTTAGACGCGCATTTTCTCCGTGCAAATGGGATGCAAATCAGATGTGGGAACTGAACTCTAATGGGACGCTGGAAAATAGTTATTCTGGCCTATGTGCAACAATGGAGCCTGTCAAAGCTACTATTAACTCCGATGGGCTTCGCTCTTGGATTGCAACCGGAAGAAATGGAGAAGTCTATGTTGTTTTCTTCAATCTAAATGAGCAGAAGACTGTGATATCTGCCCAGATATCAGACATTGCTAAAGTTCTTCCAGGCACAGACTTAAGTTCTTGTGAGGGCACTGAATTGTGGAGTGGAAGTGACGTGGTAATATCACAGGGTGCGTTATCAACGGCGGTTGAAGCGCATGGAAGTGCGCTATTTGTACTAAGCTGCAGTCCCAAGAAGAAAATAAAAATGGTTGTCACTGCTGATGCCTAA 1344 0.4234 MSSMLHGVLILAMKHDCVFGDDLDLSEISYVSEVLRKLDRSIVYSLSPGTSVTPAMAKDVIGLVNMYRITGDDWDTWWDVKGHFNVTRDFATANLIGATGLNGKSWPDLDMLPFGWLTDPGVNEGPHRYCRLNLEEQKTQITLWAIAKSPLMYGGDLRKIDPTTYGLITNPTLLEINSFSSNNMEFPYITSLRSEGQDLGGQMRRYIKETKTLYTHSLGLTNCSDPKASAWTSETVDQDVERICWKGTFRNKPLAAFCVNKRKLHFKIIEESLSQLNLGRKYHLVATNRIKFCLDASPRRKVTSNEFVRRAFSPCKWDANQMWELNSNGTLENSYSGLCATMEPVKATINSDGLRSWIATGRNGEVYVVFFNLNEQKTVISAQISDIAKVLPGTDLSSCEGTELWSGSDVVISQGALSTAVEAHGSALFVLSCSPKKKIKMVVTADA* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1046 447 Gene3D Aldolase class I 9 179 IPR013785 -
Amo20g1046 447 PRINTS Glycosyl hydrolase family 27 signature 135 156 IPR002241 GO:0004553|GO:0005975
Amo20g1046 447 PRINTS Glycosyl hydrolase family 27 signature 27 45 IPR002241 GO:0004553|GO:0005975
Amo20g1046 447 Gene3D - 346 434 IPR013780 -
Amo20g1046 447 SUPERFAMILY Ricin B-like lectins 291 357 IPR035992 -
Amo20g1046 447 SUPERFAMILY (Trans)glycosidases 30 177 IPR017853 -
Amo20g1046 447 Pfam Alpha galactosidase A 14 177 IPR002241 GO:0004553|GO:0005975
Amo20g1046 447 Pfam Alpha galactosidase C-terminal beta sandwich domain 352 431 IPR041233 -
Amo20g1046 447 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 13 431 IPR002241 GO:0004553|GO:0005975
Amo20g1046 447 PANTHER ALPHA-GALACTOSIDASE 13 431 - -
Amo20g1046 447 SUPERFAMILY Glycosyl hydrolase domain 348 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1046 Amo-Chr20 18506095 18511912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1046 13 263 Glycoside Hydrolase AT3G26380 60.714 1.49e-104 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1046 - - gmx:100777954 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5138 13 151125835 151131114 Amo20g1046 20 18506095 18511912 PCT