Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5138 ATGTGCAACACCACTGCCACTAGGAACAACCCCACAACTGTGTTCAGAGATAATGATGTTTTGCAATGTTGTTGCCTTGTTGGATATTTAACTGTGTGGGAACTCTTGTTTGGTGGAACAGCAGTACCAGCAATCATGAACTGTTTCTTAGTGTCACTCGTCTCTCTCTGCCCTCTCCTCCTTGCTCTCTGTGCTCAGAGTGTGTCATCTCGAAATGTGTCTGAAACTTACCTACAGAAAGCTAGCTTCCCACCAAGAGGTTGGAATTCATACGATTCCTTTGGCTGGACAGTTTCTGAAGAAGAATTCTTACAGAATGCTGGAATAGTTTCTCGGAGCCTCAAAGCTCATGGATACAAGTATGTTGTTGTGGATTACCTCTGGTATAGGAAGAATGTCCAAGGTGCTAATTCGAATTCTCTTGGATTTGATGTGATTGATGAGTGGGGGAGGATGATCCCTGACCCCGGAAGGTGGCCTTCGTCCACAGGTGGGAAGGGATTCAGTGAAGTAGCCAATAAAGTACATAACATGGGTTTGATGTTCGGAATTCATGTTATGAGAGGGATAAGCACACAAGCAGTCAATGCAAACACCCCTATCCTAGACACAACAAAGGCAGAATATGGGGCTACTTTACATCATAATCTAAATTTTCTTGCTGTTTCTTTCCTCTTGCAACTGCTTAGGGGGGGTGCTTATCAAGAGTCTGGTCGAGTATGGCATGCAAAAGACATAGCATTGCCGGGAAGGGCTTGTGCATGGATGTCTCATGGTTTCATGAGTGTGAATACACAGTTGGGGGCTGGGAGGGCCTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGTGAAACATGATTGTGTGTTTGGTGCTGACTTGGATTTAAATGAAATAACCTATGTATCAGGGGTTCTCCGGGAGCTTAACCATCCCATTGTATATTCTCTATCTCCTGGAACTAGTGTGACACCAGCATTGGCCAAGGATGTCAGTGGGCTAGTAAACATGTATCGTATAACAGGAGATGACTGGGATAACTGGGATGATGTCAAATCTCATTTTGATATATCAAGGGATTTAGCTGCAGCTAGTATGATAGGAGCAAAAGGTTTAAATGGGAATTCATGGCCTGATTTGGACATGCTACCATTCGGATGGCTAACTGATCCAGGTTCCAATCAAGGTCCACACAGGTTTAGTAAACTCAATCTAGAAGAGAAGAGGACACAGATGACATTGTGGTCCATGGCCAAGTCGCCCCTCATGTATGGTGGAGATCTGCGGAGTATTGATATTGTCACATATAGTCTTATCACGAATCCTATCCTGCTGGAAATTAATTCTTTCAGCTCAATTCTATGTTGCATTAATAGGCATTTTCCTGGCATCACAAGTTCGGAGAACTTGAATCATAAAGACCATCATCTTAGAGTGAAGAAAAGAAGATCCAAGAGAGGAGGGAAACCATCATATACACATGCATTAAGTCTCATTGGCTGCAGTGAAACAAAGGCAAGGGGTTGGTCTGTTGAAAGTCTCAATGAAGATCTTGAAAGAATCTGTTGGAAAAGAAGTTTAGAAAACCAGCTTCAGCCTCCTTTCTGTGTACACAAGAGAGAATTTCAGTTCAAATTAGATGGCGAGAGTACGCATCAAGAGGACTATCGGGGTAAACATCATTTGGTTGCAACCAACGAAATGAAATTCTGCTTGGATGCTTCCCCAAAACAAAAGCTTACTTCTAAGGAGTTCAAGAGTGGTACATTTTCTCCTTGCAGATGGGATGCAAATCAGGTATGCTTCACTCCATATTTCACATACAAGATTTGCATGTGGCCCTTAATCTCTAGAAATAAGTATAGAAGCCTGCATTGCCCCAATTTTGTTCCAACAGATGTGGAAGCTGAATCCAAATGGGACCATGGTAAACAGTTACTCCGGTCTGTGTGCAATAGCAGAATCTGCCAAAGTCCTGGTGGGATTCGCTCTTGGATTGCAAAAGGAAGAAGAGGTGAAGTGTATGTTGCTTTCTTCAATTTAAGTGAACAAAAGACAGTGATAAGTACAAAGACATCGTCTCTGGGTAATGCTTTTGGTGATAGAACAAGCATCACTTCCTGCCACGGCACGGAAGTTTGGAGTGGAAAGCAAGTCATAACAACTCAGGGAACTTTATCAGCTGAAGTGGGACTTCACGGATGTGCCTTATTTGTTCTCAATTGCCACTAG 2247 0.4299 MCNTTATRNNPTTVFRDNDVLQCCCLVGYLTVWELLFGGTAVPAIMNCFLVSLVSLCPLLLALCAQSVSSRNVSETYLQKASFPPRGWNSYDSFGWTVSEEEFLQNAGIVSRSLKAHGYKYVVVDYLWYRKNVQGANSNSLGFDVIDEWGRMIPDPGRWPSSTGGKGFSEVANKVHNMGLMFGIHVMRGISTQAVNANTPILDTTKAEYGATLHHNLNFLAVSFLLQLLRGGAYQESGRVWHAKDIALPGRACAWMSHGFMSVNTQLGAGRAFLRSLYEQYAAWGVDFVKHDCVFGADLDLNEITYVSGVLRELNHPIVYSLSPGTSVTPALAKDVSGLVNMYRITGDDWDNWDDVKSHFDISRDLAAASMIGAKGLNGNSWPDLDMLPFGWLTDPGSNQGPHRFSKLNLEEKRTQMTLWSMAKSPLMYGGDLRSIDIVTYSLITNPILLEINSFSSILCCINRHFPGITSSENLNHKDHHLRVKKRRSKRGGKPSYTHALSLIGCSETKARGWSVESLNEDLERICWKRSLENQLQPPFCVHKREFQFKLDGESTHQEDYRGKHHLVATNEMKFCLDASPKQKLTSKEFKSGTFSPCRWDANQVCFTPYFTYKICMWPLISRNKYRSLHCPNFVPTDVEAESKWDHGKQLLRSVCNSRICQSPGGIRSWIAKGRRGEVYVAFFNLSEQKTVISTKTSSLGNAFGDRTSITSCHGTEVWSGKQVITTQGTLSAEVGLHGCALFVLNCH* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5138 748 SUPERFAMILY (Trans)glycosidases 81 453 IPR017853 -
Amo13g5138 748 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 51 745 IPR002241 GO:0004553|GO:0005975
Amo13g5138 748 CDD GH27 84 453 IPR002241 GO:0004553|GO:0005975
Amo13g5138 748 PANTHER ALPHA-GALACTOSIDASE 51 745 - -
Amo13g5138 748 SUPERFAMILY Glycosyl hydrolase domain 662 746 - -
Amo13g5138 748 Pfam Alpha galactosidase C-terminal beta sandwich domain 666 745 IPR041233 -
Amo13g5138 748 Gene3D - 658 747 IPR013780 -
Amo13g5138 748 Pfam Alpha galactosidase A 279 453 IPR002241 GO:0004553|GO:0005975
Amo13g5138 748 Gene3D Aldolase class I 62 455 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5138 Amo-Chr13 151125835 151131114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5138 52 546 Glycoside Hydrolase AT3G26380 59.481 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5138 - - lang:109362678 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5138 13 151125835 151131114 Amo13g5138 13 151125835 151131114 ECH
Amo13g5138 13 151125835 151131114 Amo20g1046 20 18506095 18511912 PCT