Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1036 ATGAATCCGGAGCTGGAGATTTTGACAGCATTGTTTGCAATTTTGTGCTTCTTGGGGTTTATTCTGAAGGAGTCAGTCATGGGAGGGAAGAGTTCAAGAGAGTGTGTTGGTGGTGATCGGAGACATGTTTCTTCATCATATGGTGGTGGTGGTGGTTCTTCATCTTCATGGGATAACTATGGAGGGTACCCTAATCAGAGTCCATATCAAACACCTCAACACCACCATGCATCAGCTCCATATTATGACTATGCTTCTTCACAACCAAAGAGAAAGCTTGATAGGAGATATTCAAGGATTAATGATGATTACCGTTCACATGATGAGGTTACTGCTGCTCTTGCAAATGCTGGCCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGCGGTCATTCAATCGAAAATGTTTGCATCATATTGGAAATGGTTATAACCCCTATGAACAAGCTATCTCGATTATCGGGAAAACTTTATCCGTTTTCGACGAAGATAACTTGATTCCTTGTTATGGATTTGGAGATGCATCGACGCATGATCAAGATGTATTTAGTTTCCATTCGGACGAGAGGTTCTGCAATGGATTTGAGGAAGTTTTGGCACGATACAGACAAATTGTTCCGCGCCTCAAACTTGCAGGACCTACTTCATTTGCCCCAATTATCGAGATGGCGATAACTATTGTTGAGCAAAGTGGTGGCCAGTATCATGTCTTGCTGATAATTGCAGATGGACAGGTGACCAGAAGTATTGACACCAAGCATGGACACTTGAGTCCACAAGAACAGAAGACAATAGATGCCATTGTAAAAGCCAGTGAGTATCCACTCTCAATAGTTTTGGTCGGAGTTGGAGATGGACCTTGGGATATGATGAGGGAATTTGATGATAACATCCCTACTAGATCATTCGACAATTTTCAGTTTGTGAATTTTACCGAAATAATGTCGAGGAGTGCGGATCCGGCCAAAAGAGAGGCAGACTTTGCTCTGGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCCTGGAACTTGGCATCTTAGGTTCAAGGAGGGGACATTCACCAGACAGGGTTCCTCTACCCCCACCTCTTTATGAAAGGAATCCATCTAGCCTTAGCACGAGATCTTATCGGCCGGACAGTTTTCAGCAGAATACGCCTATGCATACTGGCTATGATAATAGAGTTAACGCAGAACAATCTTCAAGTCCTCTATATGATAACAAGGTTTGTCCAATTTGTCTCACCAATGCAAAGGATATGGCTTTTGGTTGCGGGCATCAGACTTGTTGCGAATGCGGTGTAAACCTCGAATTCTGCCCCATTTGCCGGAGCACAATCCAAACCAGGATAAGGCTTTACTAG 1401 0.4333 MNPELEILTALFAILCFLGFILKESVMGGKSSRECVGGDRRHVSSSYGGGGGSSSSWDNYGGYPNQSPYQTPQHHHASAPYYDYASSQPKRKLDRRYSRINDDYRSHDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKCLHHIGNGYNPYEQAISIIGKTLSVFDEDNLIPCYGFGDASTHDQDVFSFHSDERFCNGFEEVLARYRQIVPRLKLAGPTSFAPIIEMAITIVEQSGGQYHVLLIIADGQVTRSIDTKHGHLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPTRSFDNFQFVNFTEIMSRSADPAKREADFALAALMEIPSQYKATLELGILGSRRGHSPDRVPLPPPLYERNPSSLSTRSYRPDSFQQNTPMHTGYDNRVNAEQSSSPLYDNKVCPICLTNAKDMAFGCGHQTCCECGVNLEFCPICRSTIQTRIRLY* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1036 466 CDD RING-HC_RGLG_plant 422 466 IPR045317 GO:0061630|GO:0070534
Amo20g1036 466 Pfam Zinc finger, C3HC4 type (RING finger) 420 461 - -
Amo20g1036 466 MobiDBLite consensus disorder prediction 379 411 - -
Amo20g1036 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 466 IPR013083 -
Amo20g1036 466 ProSiteProfiles Zinc finger RING-type profile. 423 456 IPR001841 -
Amo20g1036 466 PANTHER RING-FINGER PROTEIN 53 466 - -
Amo20g1036 466 MobiDBLite consensus disorder prediction 363 411 - -
Amo20g1036 466 SMART VWA_4 121 324 IPR002035 -
Amo20g1036 466 Pfam Copine 146 359 IPR010734 -
Amo20g1036 466 MobiDBLite consensus disorder prediction 30 76 - -
Amo20g1036 466 SUPERFAMILY RING/U-box 412 462 - -
Amo20g1036 466 MobiDBLite consensus disorder prediction 47 74 - -
Amo20g1036 466 PANTHER COPINE FAMILY PROTEIN 1 53 466 - -
Amo20g1036 466 SUPERFAMILY vWA-like 122 306 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1036 Amo-Chr20 18320370 18325436 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1036 K16280 - gmx:100798816 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5134 13 151028839 151031977 Amo20g1036 20 18320370 18325436 PCT