Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5134 ATGCATCTAGAGGCGGAGACTTGGACAGCGTTGGTTGTGATATTGTGTTTCCTTGGTTTGATTCTGAAGGAGTCAATTATGGGAGGTAAGAGTTCAAGAGAATCTGGCGGTGATAGGAGGCATGTGCCATCGTACGGTTCTGGTGGTGCTTCATCTTCATCTTGGGACAATTATGGATACTCGCAACCGCCACCGTATGCATATCAACCGTCAATTCAACACCGGCCACCCGCCGCTCCGTATTACGACTATCAACAGCCGAAAAGGAGGTTGGATAGGAGATATTCCAAGATTGCTGATAATTACCGTTCACTCGACGAGGTTACTGCTGCTCTTTCACAAGCTGGCCTAGAATCTTCTAATCTCATTGTCGGCATTGATTTCACAAAAAGCAATGAGTGGACAGGAAAGAGATCATTCAACCGAAAAAGTTTACATCAYCTCGGAAATGGCCATAATCCTTATGAACAGGCGATCTCCATTATTGGGACAACTCTATCTGCCTTTGACGAGGATAACTTGATTCCATGTTTTGGATTCGGAGATGCATCAACACATGATCAAGATGTCTTCAGTTTCTACCCAGATGATAGATTCTGCAATGGATTTGAGGAAGTTTTGTCAAAATACAGAGAAATTGTTCCTCGTCTCAAACTAGCAGGACCCACTTCTTTYGCACCTATYATTGAGATGGCAATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGCGTTGACACAGAGCGTGGCCAGTTAAGTCCACAGGAACAGAAGACAATTGATGCAATTGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATTCCTGCTCGAGCCTTCGACAATTTCCAGTTTGTGAATTTTACTGAAATAATGTCAAAGAATGTAGATTCAGAAAGGAAAGAGACAGAGTTTGCTCTATCAGCTCTGATGGAGATACCTTCTCAATATAAGGCAACCATAGACCATGGCATATTGGGTGCTCGGAGGGGATATTCACCGGACAGGGTTGCTTTACCTCCACCTCAATATGACAGGGCTTCCAGCAGCAACAACATATCTTTTCGCAGTAATAGTTTTCAGCAGAGTACTCCTTCGCAYACTGKCTATGATAATGCAGTTAGTACCAGTGCAGAATCATCACCGGGTGGCTTATATGATCATAAGCTTTGTCCAATTTGTCTTACTAATGGGAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTAACTGTGGAGAGAATCTTGAATTCTGCCCCATTTGCAGGAGCACAATCGATACTAGAATAAAGCTTTACTAG 1398 0.432 MHLEAETWTALVVILCFLGLILKESIMGGKSSRESGGDRRHVPSYGSGGASSSSWDNYGYSQPPPYAYQPSIQHRPPAAPYYDYQQPKRRLDRRYSKIADNYRSLDEVTAALSQAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHLGNGHNPYEQAISIIGTTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDRFCNGFEEVLSKYREIVPRLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTERGQLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDSERKETEFALSALMEIPSQYKATIDHGILGARRGYSPDRVALPPPQYDRASSSNNISFRSNSFQQSTPSHTXYDNAVSTSAESSPGGLYDHKLCPICLTNGKDMAFGCGHQTCCNCGENLEFCPICRSTIDTRIKLY* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5134 465 SUPERFAMILY RING/U-box 417 461 - -
Amo13g5134 465 MobiDBLite consensus disorder prediction 29 48 - -
Amo13g5134 465 CDD RING-HC_RGLG_plant 421 465 IPR045317 GO:0061630|GO:0070534
Amo13g5134 465 Pfam Zinc finger, C3HC4 type (RING finger) 419 460 - -
Amo13g5134 465 SUPERFAMILY vWA-like 121 303 IPR036465 -
Amo13g5134 465 Pfam Copine 144 357 IPR010734 -
Amo13g5134 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 465 IPR013083 -
Amo13g5134 465 ProSiteProfiles Zinc finger RING-type profile. 422 455 IPR001841 -
Amo13g5134 465 MobiDBLite consensus disorder prediction 363 406 - -
Amo13g5134 465 PANTHER RING-FINGER PROTEIN 27 465 - -
Amo13g5134 465 MobiDBLite consensus disorder prediction 375 406 - -
Amo13g5134 465 PANTHER COPINE FAMILY PROTEIN 1 27 465 - -
Amo13g5134 465 SMART VWA_4 119 322 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5134 Amo-Chr13 151028839 151031977 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5134 K16280 - gmx:100800161 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5134 13 151028839 151031977 Amo13g5134 13 151028839 151031977 ECH
Amo13g5134 13 151028839 151031977 Amo20g1036 20 18320370 18325436 PCT