Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1009 ATGCAAAGTCGTTGTTCCTCACTCAGTCACTTGTGCTTGGGCTCCAGAAAACAAGCAAGGAACCAAGTACCATCTCACCCAGCCGCCACTCCTTTCCATATGTCTTCTCCCGGCCACGGCGCCTCCTCCGCCGTGCAGGTGGCGGAGCAATTCTTATCCGCTGGTCGGAGCTCCGAGAAGCTGAGCCTTTCAACACTCCAATCGAAGATGAAGTGTGACCCGGAAGGCTACGTATCGCAGCTCCTTCGACTCTGCGACCAGTTCAATTCCTCCCTCGTGCTCTTCGAGCAACAAGCCGCCATGAACTTCGCCTCCATCACCGGCATCGGTGGCGACCCCACCGTTGCCAAAGACCTCGGCGATAAGGCAATGTTCCTCGCACACGTCACCCCTTTCTACCCCAAACACCTCAAAGATTTCCCCCAAAAACTCGCCAGTTTGATCCGTTGCGCCTCCCGCAATCTCCCGTCGGGGCTCCGCTGCCGCCTCGCTCAAGCTCTAATTCTCCTCGTTAATCGGAAGATTGTTGATATTGGCGAAACTCTGTCGTTGTTCATGGAGCTTCAAACCTTAGGTGACAGGACATTGAAGAAGCTGGCATTTGATCACGTCATTCACAGTATTAAGCGCATGAACCAGAAGCATAAGAACCAAGCGAAGAACCGGGCTCTGCAAAATGTCTTGTTTTCAATGTTGCAGGAAGAGGATGAAGTGCGAGCTAAGAGAGCGCTCGTGACACTGTGTGAACTTCACAGAAGAAAAGACTGGTTTGACGAGAGAACAGCTAATGCAATTTGCGGTGCTTGTTTCCATCCAGCACCAAGGATCATGAAAGCGGCTTTATCGTTTCTACTAGATTATGAGAAGATTGAAAATGATTCAGACAGTGACAATTCAGACAGCGAAGATGAAACCAAGGAGTCTCCTCAAGTCATCCTTAGTAAGGAGACAATTTATAAGGCACACCACCAAGGAACAGCAGCTAGCAAAAAGAAAAAGAAAGCCAAACTAGAACGTGCCATGCGCAGCATCAAAAGGAAGCAACGTTTGTCAACTGAGAGGAACAATAACAGTTATTATTCACCACTTAACCATCTGCAAGATGCACAGGGTTTCGCTGAGAAGCTGTTGTCACGTTTACACAAATGTAATGAAAAATTTGAGGTTAAGCTGATGTTGATGAAATTGATTGCTCGAACTGTTGGGCTTCACCGGTTAATTTTGTTAGACTTCTATCGATTTCTTCAGAAATATATTCAGCCACGTCAACAAGATATTACGAATTTGCTTGCTGCAGTGGTTCAGGCTTGCCATGACATGGTTCCTCCTAATGAAGTTGAGCCCTTGTTCTATCAAATAGTAAATGAGTTTATACATGATCGCTCTCGTCCTGAGGCTATGACTGTTGGACTAAATGCAGTCCGGGAAATATGTATGCGGATGCCATTGTTAATGAATGAAGACTTATTACGAGACCTTGCTCTGCATAAGAAATCACATGAGAAGGGAGTTTCAATAGCAGCTCGATCTCTGATTGGCTTATTCAGGGAGGTTAACCCTTTATTGTTAGTTAAGAAGGATCGTGGCCGGCCTATGGACGCCAAGGCAAGACCAAAATCATATGGAGAAGTTAGTGCTGCAACTGATGTTCCCGGTGCTGAGTTCTTGCCCATTGTACACAATGAGGATGATCAGGAGGGTAGTGATTCCGATGATTCTGTAGGCAGTGGCTTTGACAATGACCAGGAAAATGATCTGATGACTATCAATGATGATGATGAGATAAGTTCTGATACCAAGACTGGTGAGAGTGATGAGGAGGATGATCTTGAAGATATGGAGGATGATCTTGAAGATATGGAGGATGACCTTGAAGACAGTGAACAGGATGACGAAGAGGATGGTGAGGTTTCCGAACAGGAAGATGATGATGTGCARACTTCTTGTGATGATGAAAGTGTAGGTGCAAATAGTAGAAAGAAAGACTCAGCAAAGAAAAGAAAGATTGCTGATTTTGATGATCAGCTTTTAGCTGCTGATACAAGTCTCCGGGCCTTGAAGAAATTGGCAGGGACAACAATGGGGCATGCACCCCTTCCAGAATCTACAGATGGTATTCTATCCAATGAGGACTTCAAGAGGATCAAGGAACTAAAGGAAAAACATGAAGCAAGAAACACATTTGCTCAGCATGGGCTAGCACGTTCGGCAATAATTAAGGTTCCAGATTCTGATAGACTAAGTTTGAAGCGAGTAGATGGCGCGACGCTTGAAGTTCATGTGAAGAAAAGGCAAAGCAAGGAAGAAAAGTTGGCATTGATTAAAGCAGGAAGAGAGGATAGAGGAACATACCATTCTAAAACAGCTGTAAAGCAGAAAAAGACGGGTGGACTAAGCAACCGTCAGAAGGAACACAAGAAGAAAATGCCAGTGGCTGCAAAGAGAAGCAAGATCGCAAAATCTCGTGTAGAGAAGAAGAAAAAGAATCAGCGAGCAGGGAAACAGTTCCGAGGAAGGAAAGCATGGAAATGA 2532 0.4546 MQSRCSSLSHLCLGSRKQARNQVPSHPAATPFHMSSPGHGASSAVQVAEQFLSAGRSSEKLSLSTLQSKMKCDPEGYVSQLLRLCDQFNSSLVLFEQQAAMNFASITGIGGDPTVAKDLGDKAMFLAHVTPFYPKHLKDFPQKLASLIRCASRNLPSGLRCRLAQALILLVNRKIVDIGETLSLFMELQTLGDRTLKKLAFDHVIHSIKRMNQKHKNQAKNRALQNVLFSMLQEEDEVRAKRALVTLCELHRRKDWFDERTANAICGACFHPAPRIMKAALSFLLDYEKIENDSDSDNSDSEDETKESPQVILSKETIYKAHHQGTAASKKKKKAKLERAMRSIKRKQRLSTERNNNSYYSPLNHLQDAQGFAEKLLSRLHKCNEKFEVKLMLMKLIARTVGLHRLILLDFYRFLQKYIQPRQQDITNLLAAVVQACHDMVPPNEVEPLFYQIVNEFIHDRSRPEAMTVGLNAVREICMRMPLLMNEDLLRDLALHKKSHEKGVSIAARSLIGLFREVNPLLLVKKDRGRPMDAKARPKSYGEVSAATDVPGAEFLPIVHNEDDQEGSDSDDSVGSGFDNDQENDLMTINDDDEISSDTKTGESDEEDDLEDMEDDLEDMEDDLEDSEQDDEEDGEVSEQEDDDVQTSCDDESVGANSRKKDSAKKRKIADFDDQLLAADTSLRALKKLAGTTMGHAPLPESTDGILSNEDFKRIKELKEKHEARNTFAQHGLARSAIIKVPDSDRLSLKRVDGATLEVHVKKRQSKEEKLALIKAGREDRGTYHSKTAVKQKKTGGLSNRQKEHKKKMPVAAKRSKIAKSRVEKKKKNQRAGKQFRGRKAWK* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1009 843 MobiDBLite consensus disorder prediction 585 649 - -
Amo20g1009 843 MobiDBLite consensus disorder prediction 562 671 - -
Amo20g1009 843 Coils Coil 603 630 - -
Amo20g1009 843 MobiDBLite consensus disorder prediction 19 40 - -
Amo20g1009 843 MobiDBLite consensus disorder prediction 654 671 - -
Amo20g1009 843 Pfam NUC130/3NT domain 125 176 IPR012977 -
Amo20g1009 843 Coils Coil 327 350 - -
Amo20g1009 843 Pfam SDA1 485 840 IPR007949 -
Amo20g1009 843 MobiDBLite consensus disorder prediction 807 843 - -
Amo20g1009 843 PANTHER HSDA/SDA1-RELATED 57 843 IPR027312 GO:0000055|GO:0042273
Amo20g1009 843 PANTHER PROTEIN SDA1 HOMOLOG 57 843 - -
Amo20g1009 843 SUPERFAMILY ARM repeat 136 521 IPR016024 -
Amo20g1009 843 MobiDBLite consensus disorder prediction 776 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1009 Amo-Chr20 17785536 17790510 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1009 K14856 - gmx:100816774 1080.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1009 20 17785536 17790510 Amo10g0591 10 6721300 6727664 hybridization