Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0944 ATGGTATCAAGGGCATATGGGAATAGATGYGGAGAGGCCAATCTTTCTATTCTGGAAAATCTGGTGCAACAGCGCCATAAATATGCTCGTTTACTTGGCTATTCAAACTATGCAGAGTATGCTGTTGATGTTAGAATGGCAAAGACACCTATGAAGGTGTTTGAGTTCCTGGAGGATCTATCCACCAGTTTAACTGAGCTGGCCATGAAGGAACTTGATACATTGAAGAATTTGAAGAAGAGGGAGGAAGGGGAATTCCCATTTGGAATTGAGGACCTGCTGTATTATGTAAAACGGGTTGAAGACCAGAATTATGATCTTGACTTTGGCGAGCTCAATCAATACTTACCAATAAGTTTAGTTCTATCTGGGATCTTCAAAATTCTTCAAGATCTATTTGGTTTAAGGTTTGAGGAAATAGCAGGAGCTGATGTTTGGCATTCTGATGTTCGAGTGTTTTCAGTATTTGACTTAGGTTCTAGTGAAATCTTAGGTTACTGCTACCTTGATTTGTTTTCAAGGGAAGGGAAATATGGTCATACTTGTGTCATGGCTCTCCAGAACAGTGCATTAACACTCAGTGGGGAACAGCAGATACCAGTTGCATTACTAATATCTCAAATTCAAAAAGATGGCAGCAGTAGTCCTGGGTTGTTGCGGTTCTCCGAAGTGGTCGGTCTATTCCACGAGTTTGGCCATGTGATTCAACAAATTTGCAACCGCTCCTCGTTTGCAAGATTTTCTGGACTACGTGTTGATCCCGACTTCGTGGAAATACCTGCTCAACTCCTAGAAAACTGGTGTTATGAAACCAGCTGTCTGAAGTTGATTTCTGGATTTCATCAGGATATTACAAAGCCGATAAAGGATGATACATGTGAATCAATCAAAAGATGGAGGGCTTCATTTTCGGCACTTAAATTGAAACAAGAGATTCTGTATTGTCTTTTTGATCAAATCATGCATTCTGCGGATAACATAGACATTCGGGAGTTATTCAAGCATCTTCATCCCAAGGTGATGTTAGGTTTGCCAGCATTAGAAGGAACCAATCCAGCTTCATGTTTTCCTTCTAGTGTTATTGGTTATGAAGCCGCTTGCTACAGCCGTGTATGGAGTGAGGTTTTTGCTGCTGATATTTTTGCCTCGAAGTTTTGCAATGATGTTGTAAATCAGCATGCTGGCATGCAATTTAGGAAGAAGGTATTGGCCCCCGGAGGAGCAAAGGATTCTATTGAAGTGTTGTCGGACTTTCTAGGAAGAGAACCTTCAATTCGAGCTTATATTGAGAATAAAGTCAAGTATATTCTGTAA 1314 0.4064 MVSRAYGNRCGEANLSILENLVQQRHKYARLLGYSNYAEYAVDVRMAKTPMKVFEFLEDLSTSLTELAMKELDTLKNLKKREEGEFPFGIEDLLYYVKRVEDQNYDLDFGELNQYLPISLVLSGIFKILQDLFGLRFEEIAGADVWHSDVRVFSVFDLGSSEILGYCYLDLFSREGKYGHTCVMALQNSALTLSGEQQIPVALLISQIQKDGSSSPGLLRFSEVVGLFHEFGHVIQQICNRSSFARFSGLRVDPDFVEIPAQLLENWCYETSCLKLISGFHQDITKPIKDDTCESIKRWRASFSALKLKQEILYCLFDQIMHSADNIDIRELFKHLHPKVMLGLPALEGTNPASCFPSSVIGYEAACYSRVWSEVFAADIFASKFCNDVVNQHAGMQFRKKVLAPGGAKDSIEVLSDFLGREPSIRAYIENKVKYIL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0944 437 Gene3D Neurolysin, domain 3 2 429 IPR024077 -
Amo20g0944 437 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 3 430 - -
Amo20g0944 437 Pfam Peptidase family M3 6 430 IPR001567 GO:0004222|GO:0006508
Amo20g0944 437 Gene3D Collagenase (Catalytic Domain) 117 267 IPR024079 GO:0008237
Amo20g0944 437 PANTHER SACCHAROLYSIN 2 434 - -
Amo20g0944 437 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 2 434 IPR045090 GO:0004222|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0944 Amo-Chr20 15765349 15775123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0944 K01392 - gmx:100793518 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0944 20 15765349 15775123 Amo20g0944 20 15765349 15775123 ECH
Amo20g0944 20 15765349 15775123 Amo10g0519 10 5342680 5351860 hybridization