Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0519 ATGGCGGAAAGTGAAGCAAATCGCGAGAAAATGGACCAACAGATGAAGAAGAAAGGTCACAGGCGCTTGATCGCTTTCACCGGAGCTGCTGCGGTGGTCGCAATCGCCGCCAACCTCGCCCTCACCTTCATCAAGTACCATAAGGACAAGAAATCAAGCAAGAAATATCTCGCGGGTTTGTATGTGCGCGTTAACCTAACTGCATCTGAGATTCTCAAGTTAGCTGACCAAATTATTGCAAAGTCAAACAAGGTCCACGATTCTGTTGCAGCTGTGCCATTGGATAAGGTTACGTACTCGAATGTTATATCACCTCTGGCAGAACTTCAGGCACAACAATTTCCGTTGATCCAGTCTTGTGTGTTTCCAAAGATGGTATCAACTCGGGAGGATGTGCGCAAAGCAAGTGCTGAAGCAGAGCAAAGGATAGATGCTCATATTGACATGTGCAGCAAACGCGAAGATGTATATATTGTAGTTAAAGCATTTGCAACAAAGGGAGAGTGGATAAATGCTGAAGCCAAATCCTTTGTTCAGATTCTGGTGAGAGACTTTGAGAGAAATGGATTGAACCTCACTGCAAGCAAAAGAGAAGAATTGCTGCGTCTAAGAGCTCAGATTGATGAGTTAAGCTTTAGATATATCCAAAATCTCAATGACGATAGCAAATTTCTTCCCTTCAATGAGGCAGAGTTAGCTGGATTACCACAAGAGTTTCTCAAGTGTTTGGATAAATCTGAAGATGGAAAGTTGAAGATATACTTGCGAAGTCATCATGTTGCAGCTGTTCTTGAATTTTGCAAGGTAGGAACTACAAGACGGATGGTATCAAGGGCATATGGGAATAGATGRGGAGAGGCCAATCTTTCTATTCTGGAAAATCTGGTGCAACAGCGCCATAAATATGCTCGTTTACTTGGCTATTCAAACTATGCAGAGTATGCTGTTGATGTTAGAATGGCAAAGACACCTATGAAGGTGTTTGAGTTCCTGGAGGATCTATCCACCAGTTTAACTGAGCTGGCCATGAAGGAACTTGATACATTGAAGAATTTGAAGAAGAGGGAGGAAGGGGAATTCCCATTTGGAATTGAGGACCTGCTGTATTATGTAAAACGGGTTGAAGACCAGAATTATGATCTTGACTTTGGCGAGCTCAATCAATACTTACCAATAAGTTTAGTTCTATCTGGGATCTTCAAAATTCTTCAAGATCTATTTGGTTTAAGGTTTGAGGAAATAGCAGGAGCTGATGTTTGGCATTCTGATGTTCGAGTGTTTTCAGTACTTGACTTAGGTTCTAGTGAAATCTTAGGTTACTGCTACTTTGATTTGTTTTCAAGGGAAGGGAAATATGGTCATACTTGTGTCATGGCTCTCCAGAACAGTGCATTAACACTCAGTGGGGAACAGCAGATACCAGTTGCATTACTAATATCTCAAATTCAAAAAGATGGCAACAGTTGTCCTGGGTTGTTGCGGTTCTCCGAAGTGGTCGGTCTATTCCACGAGTTTGGCCATGTGATTCAACAAATTTGCAACCGCTCCTCGTTTGCAAGATTTTCTGGACTACGTGTTGATCCCGACTTCGTGGAAATACCTGCTCAACTCCTAGAAAACTGGTGTTATGAAACCAGCTGTCTGAAGTTGATTTCTGGATTTCATCAGGATATTACAAAGCCGATAAAGGATGATACATGTGAATCAATCAAAAGATGGAGGGCTTCATTTTCGGCACTTAAATTGAAACAAGAGATTCTGTATTGTCTTTTTGATCAAATCATGCATTCTGCGGATAACATAGACATTCGGGAGTTGTTCAAGCATCTTCATCCCAAGGTGATGTTAGGTTTGCCAGCATTAGAAGGAACCAATCCAGCTTCATGTTTTCCTTCTAGTGTTATTGGTTATGAAGCGGCTTGCTACAGCCGTGTATGGAGTGAGGTTTTTGCTGCTGATATTTTTGCCTCGAAGTTTTGCAATGATGTTGTAAATCAGCATGCTGGCATGCAATTTAGGAAGAAGGTATTGGCCCCCGGAGGAGCAAAGGATTCTATTGAAGTGTTGTCGGACTTTTTAGGAAGAGAACCTTCAATTCGAGCTTATATTGAGAATAAAGTCAAGTATATTCTGTAA 2136 0.4157 MAESEANREKMDQQMKKKGHRRLIAFTGAAAVVAIAANLALTFIKYHKDKKSSKKYLAGLYVRVNLTASEILKLADQIIAKSNKVHDSVAAVPLDKVTYSNVISPLAELQAQQFPLIQSCVFPKMVSTREDVRKASAEAEQRIDAHIDMCSKREDVYIVVKAFATKGEWINAEAKSFVQILVRDFERNGLNLTASKREELLRLRAQIDELSFRYIQNLNDDSKFLPFNEAELAGLPQEFLKCLDKSEDGKLKIYLRSHHVAAVLEFCKVGTTRRMVSRAYGNRXGEANLSILENLVQQRHKYARLLGYSNYAEYAVDVRMAKTPMKVFEFLEDLSTSLTELAMKELDTLKNLKKREEGEFPFGIEDLLYYVKRVEDQNYDLDFGELNQYLPISLVLSGIFKILQDLFGLRFEEIAGADVWHSDVRVFSVLDLGSSEILGYCYFDLFSREGKYGHTCVMALQNSALTLSGEQQIPVALLISQIQKDGNSCPGLLRFSEVVGLFHEFGHVIQQICNRSSFARFSGLRVDPDFVEIPAQLLENWCYETSCLKLISGFHQDITKPIKDDTCESIKRWRASFSALKLKQEILYCLFDQIMHSADNIDIRELFKHLHPKVMLGLPALEGTNPASCFPSSVIGYEAACYSRVWSEVFAADIFASKFCNDVVNQHAGMQFRKKVLAPGGAKDSIEVLSDFLGREPSIRAYIENKVKYIL* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0519 711 PANTHER SACCHAROLYSIN 51 708 - -
Amo10g0519 711 CDD M3A_TOP 72 704 - -
Amo10g0519 711 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 51 708 IPR045090 GO:0004222|GO:0006508
Amo10g0519 711 Gene3D Endopeptidase. Chain P; domain 1 42 187 IPR024080 -
Amo10g0519 711 Pfam Peptidase family M3 267 704 IPR001567 GO:0004222|GO:0006508
Amo10g0519 711 Gene3D Neurolysin, domain 3 197 703 IPR024077 -
Amo10g0519 711 Gene3D Collagenase (Catalytic Domain) 391 541 IPR024079 GO:0008237
Amo10g0519 711 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 64 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0519 Amo-Chr10 5342680 5351860 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0519 K01392 - gmx:100793518 1140.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0944 20 15765349 15775123 Amo10g0519 10 5342680 5351860 hybridization