Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0476 ATGATTATGTTGGTGAATTCTGGATCGGTACGGAAACAGGTTTTTCCGATTGATTATGAGAGACAAGTGTCGCAGAGGCTGGTTGATGCTGTTCATTACGGAAAAAACGACACTGCGTTGGAGCTAATGGCGAATCTCTACGTGGACGTGAACTTCGTGGGAACGGTGTCGTTTAAGTCCAAAAGGACGGAGATCGTGCTGAACGACGAGTCGGCTCACCGAGTTAAATCGGTGTACGAGGAGTTCAAGACGGAGGTTACTGCTCTGTTCCTTGCCGCGCATTCTAACAACTTGACTCTACTCAGGAAGCTTTTGAGTGTCGGAGGAGACATAAACACGAGAGTATTTCGCGGGTACGCGACGACGGCGACGGTGAGGGAAGGGCATCTAAAAGTGTTGGAGGTGCTCATCAATGGCGGGGCATCACAACATGCATGTGAGGAGGCTTTGATGGAAACAAGCTACATGGGACGTGCCAGGTTTAGTGAACTTCTCATGCAGACACACATGATTCGTCCTCATGTTGCTGTTCATGCTCTTGTCTCTGCTTCTTCCAGAGGCTTCGTTGATGTTGTTGACGTTCTCATCAAGGTAAAAACACCCATTATTTTTGGATGTGAAGCAATTGATAGGACATTGCTGCAATCTTCGAAGCCATTTCTCCACGCCAATGTTGATTGCAATGCTTTGTTCGCTGCTGTTGTTAGCAGGCAGATTGATGTTGTCAGATTATTGTTGCAGGTTGGTGTAAAGCTTGATATGAAGGTGAAACTAGGGGCATGGTCATGGGAAACAGAAACAGGAGAAGAATTTCGAGTTGGTGTTGGTCTAGCCGAAGCATACCCTATAACATGGTGTGCTGTGGAATATTTTGAATCCACTGGTTCTATATTGCAGATGCTCTTAGCCATATTTCCCCAAAACATTGCACATTGGAAGAACCCTTTGCACCATAATGGCGCGAATGTTGAAGCGCCGGTGCAGACGGATGTGCACCCAATTCACATGGCTGCAAGGCTTGGATCATGCAGCATTCTTCAATGCTTGATTAAAGGTGGGTGTGACTTGGATTCAAGAACAAAATCTGGTGACACTGCAGTAATGATTTCATCATCAGGTGCTGATTTGGGTTTGGTGAATTCATCTGGTCATTGTTTAGCTTCCATAGCGAATTCTGTTCAATGGAGTAATGTGTTCCAGAGAGTAATCCTTGATGTGATTAGATCAGGAAAGGTTGTTAAATCAAGCAATGCTTCGAGATTTTCTGCTTTGTTGTTTGCGACTCGCGCCAACGACATAGAGGGTGTTAAGAGACTTATTGAGAATGGAAACATTGATATGAATGAGCAAAATGAAAATGGTTTCTCGGCCACGATGATCGCGGCTGCTATTGGTAATGTTGAGGCTTTTAGGCTTCTTCTTTACGCCGGCGCCGACATACTTGAGCTTAAAAACAAGTATGGTTTGACAGCACTTAACCTCATAGATGTTAGCCAAAATGGTGAAGCGTTTCAAAAGGTGATGCTTGAATTCGCGGTTAGAAGAGGGAGTGAAATTGAAGGTTGTAATGAGGTGAATCCTTTACACAGGGCAGCAAGATATGGAGCCATAGACATTGTTCAAAAGCTATTAAAAGAAGGGAATTATGATGTGAATTCGTTTGATTCACAAGGATACACCCCATTGATGATAGCGGCTAAAGCTTGCCGCGGCGACATGTGTAAGCTTTTGATCTCATTTGGAGCCAAATGTGAAGTTGAGAATGAGAGGCATGAGACAGCACTTTCACTAGCAAGAGAAAATGGAAATGGAAATGAAGCAGAAGTTAAGAAACACACAAAGTGTGGTAAAGGATCACCGCATAGCAAACAACTCAGGATGGTTAAGGTTGCTGGGATTTTAAGGTGGGGAAAAGCAAGTAAAAGGAATGTGGTTTGTGAAAATGCTAAGGTTGGAGCAAGTGAGAGATTTAGGTGGAATAGAAGGAAGAAGTTTGATGTTGATGAAGCAGGAATTTTTCATGTGGTTACTACAAAGAATAAGGAAGTGCATTTTGTATGTGAGGGTGGGGTGCAAATGGCTGAGTTGTGGGTTAGAGGTATTAGATTGGTTACAAGAGAAGCTATTTTTGGTAATAGTACTTAA 2145 0.4359 MIMLVNSGSVRKQVFPIDYERQVSQRLVDAVHYGKNDTALELMANLYVDVNFVGTVSFKSKRTEIVLNDESAHRVKSVYEEFKTEVTALFLAAHSNNLTLLRKLLSVGGDINTRVFRGYATTATVREGHLKVLEVLINGGASQHACEEALMETSYMGRARFSELLMQTHMIRPHVAVHALVSASSRGFVDVVDVLIKVKTPIIFGCEAIDRTLLQSSKPFLHANVDCNALFAAVVSRQIDVVRLLLQVGVKLDMKVKLGAWSWETETGEEFRVGVGLAEAYPITWCAVEYFESTGSILQMLLAIFPQNIAHWKNPLHHNGANVEAPVQTDVHPIHMAARLGSCSILQCLIKGGCDLDSRTKSGDTAVMISSSGADLGLVNSSGHCLASIANSVQWSNVFQRVILDVIRSGKVVKSSNASRFSALLFATRANDIEGVKRLIENGNIDMNEQNENGFSATMIAAAIGNVEAFRLLLYAGADILELKNKYGLTALNLIDVSQNGEAFQKVMLEFAVRRGSEIEGCNEVNPLHRAARYGAIDIVQKLLKEGNYDVNSFDSQGYTPLMIAAKACRGDMCKLLISFGAKCEVENERHETALSLARENGNGNEAEVKKHTKCGKGSPHSKQLRMVKVAGILRWGKASKRNVVCENAKVGASERFRWNRRKKFDVDEAGIFHVVTTKNKEVHFVCEGGVQMAELWVRGIRLVTREAIFGNST* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0476 714 ProSiteProfiles Ankyrin repeat region circular profile. 557 589 - -
Amo10g0476 714 Gene3D - 507 617 IPR036770 -
Amo10g0476 714 ProSiteProfiles Ankyrin repeat profile. 329 361 IPR002110 GO:0005515
Amo10g0476 714 PANTHER ANKYRIN DOMAIN PROTEIN 8 712 - -
Amo10g0476 714 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Amo10g0476 714 Pfam Ankyrin repeats (3 copies) 508 586 IPR002110 GO:0005515
Amo10g0476 714 ProSiteProfiles Ankyrin repeat profile. 453 485 IPR002110 GO:0005515
Amo10g0476 714 ProSiteProfiles Ankyrin repeat region circular profile. 453 480 - -
Amo10g0476 714 Gene3D - 398 506 IPR036770 -
Amo10g0476 714 Gene3D - 286 397 IPR036770 -
Amo10g0476 714 ProSiteProfiles Ankyrin repeat profile. 523 547 IPR002110 GO:0005515
Amo10g0476 714 SMART ANK_2a 453 482 IPR002110 GO:0005515
Amo10g0476 714 SMART ANK_2a 225 254 IPR002110 GO:0005515
Amo10g0476 714 SMART ANK_2a 84 113 IPR002110 GO:0005515
Amo10g0476 714 SMART ANK_2a 329 358 IPR002110 GO:0005515
Amo10g0476 714 SMART ANK_2a 419 449 IPR002110 GO:0005515
Amo10g0476 714 SMART ANK_2a 557 586 IPR002110 GO:0005515
Amo10g0476 714 SMART ANK_2a 523 553 IPR002110 GO:0005515
Amo10g0476 714 SMART ANK_2a 116 145 IPR002110 GO:0005515
Amo10g0476 714 PANTHER ANKYRIN REPEAT-CONTAINING 8 712 - -
Amo10g0476 714 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Amo10g0476 714 SUPERFAMILY Ankyrin repeat 27 398 IPR036770 -
Amo10g0476 714 SUPERFAMILY Ankyrin repeat 302 605 IPR036770 -
Amo10g0476 714 ProSiteProfiles Ankyrin repeat region circular profile. 523 547 - -
Amo10g0476 714 Pfam Ankyrin repeats (many copies) 426 474 IPR002110 GO:0005515
Amo10g0476 714 Gene3D - 11 267 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0476 Amo-Chr10 4755176 4762759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0476 417 626 Miscellaneous Gene Families AT1G07710 25.600 1.14e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0476 - - gmx:100795638 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0909 20 15108521 15113906 Amo10g0476 10 4755176 4762759 hybridization