Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0902 ATGTGTTTCACCAATTTGGCCAATCAAGACAAGTTAACTTCTTTGCAAACCAATCATTTCTTTGCCTCTGAGGTACTGGAAAACGATGATAGCCCCATTCTACCTGGTCTGCCTGATGATGTGGCAAAACATTGCCTTGCTCTTGTGCCTCGTTCTAACGTCCCAACTATTGGTGGTGTCTGTAAGAGATGGAGGTCATTTATTCAAAGCAAAGAGTTCATTACTGTGCGAAAATTGGCAGGAATGGTTGAGGAATGGCTCTATTTCTTAACAATGGATACTGAAGGAGAGGGAACTCATTGGGAGGTTATGGATCGTCCCAGTCATAAATGCCAAGCTCTTCCACCGATGCCTGGTCCGGTAAAGGCTGGATTTGGAGTGGTGGTTCTTAATGGAAAGCTTCTTGTTATTGCTGGATATTCAACTACAGATAGAAGTACCTTTGCCTCAGCAGAGGTTTACCAATATGACTCGCTCCTCAACAATTGGAGCAGACTATCAAAAATGAATGTGGCTCGTTATGACTTTGCATGTGCCGAAGTCAATGGCTTGGTTTATGCTGTAGGAGGCTATGGATTGGACGGTGAAATTCTCTCTAGTGCTGAGGTGTACGACCCTGACACCGACAAATGGACACTGATAGAGAGTGTCCGGCGCCCAAGATGGGGTTGCTTTGCCTGTTCATTGGATGGTAAGCTCTATGTCATGGGTGGAAGGTCGAGCTTTACAATTGGAAACTCCAAGTTTGTTGATGTTTATGACCCTGAAGTCCACAGCTGGGGTGAGTTCAAGAACGGCTGTGTTATGGTCACAGCGCACGCAGTATTGGGAAAGAAATTGTTCTGTATGGAGTGGAAGAACCAGAGGAAGCTAGCAATATTCTGTTCTGAAGACAATTCGTGGAAAATGGTACCACTTCCACTCACTGGTAGCTCCAGTGTTGATTTTAGATTTGGGATATTTGATGAAAAGCTGTTGCTATCCTCACTGGAAGCAGGACCCTCTTATCAAACTTTGTTGTATGATCCAAATGCAGCTAAAGGGTCAGAGTGGCAAATTTCTGATATAAAACCATCTGGTGTGTTCTTGTGCAGTGTAACAATCAAGGCATGA 1113 0.4429 MCFTNLANQDKLTSLQTNHFFASEVLENDDSPILPGLPDDVAKHCLALVPRSNVPTIGGVCKRWRSFIQSKEFITVRKLAGMVEEWLYFLTMDTEGEGTHWEVMDRPSHKCQALPPMPGPVKAGFGVVVLNGKLLVIAGYSTTDRSTFASAEVYQYDSLLNNWSRLSKMNVARYDFACAEVNGLVYAVGGYGLDGEILSSAEVYDPDTDKWTLIESVRRPRWGCFACSLDGKLYVMGGRSSFTIGNSKFVDVYDPEVHSWGEFKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFCSEDNSWKMVPLPLTGSSSVDFRFGIFDEKLLLSSLEAGPSYQTLLYDPNAAKGSEWQISDIKPSGVFLCSVTIKA* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0902 370 SUPERFAMILY Kelch motif 84 326 IPR015915 GO:0005515
Amo20g0902 370 SMART fbox_2 37 77 IPR001810 GO:0005515
Amo20g0902 370 Gene3D - 70 364 IPR015915 GO:0005515
Amo20g0902 370 Pfam F-box domain 36 73 IPR001810 GO:0005515
Amo20g0902 370 SUPERFAMILY F-box domain 23 73 IPR036047 GO:0005515
Amo20g0902 370 PANTHER KELCH REPEAT F-BOX PROTEIN 1 370 - -
Amo20g0902 370 SMART kelc_smart 184 231 IPR006652 GO:0005515
Amo20g0902 370 SMART kelc_smart 133 183 IPR006652 GO:0005515
Amo20g0902 370 PANTHER OS02G0202900 PROTEIN 1 370 IPR045887 -
Amo20g0902 370 Pfam Kelch motif 123 170 IPR006652 GO:0005515
Amo20g0902 370 Pfam Kelch motif 172 215 IPR006652 GO:0005515
Amo20g0902 370 Pfam Kelch motif 223 260 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0902 Amo-Chr20 14957748 14959587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0902 37 215 Miscellaneous Gene Families AT4G33900 30.102 7.27e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0902 - - gmx:100802912 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0902 20 14957748 14959587 Amo10g0426 10 4354498 4355986 hybridization