Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0426 ATGCCTGGTTTTGTTGCTGGAAAGAAGAGATCTACAGGCCGAAACATGTGTTTCACCAATTTGGCCAATCAAGACAAGTTAACTTGTTTGCAAACCAATCATTTCTTTGCCTCTGAGGTACCGGAAAACGATGATAGCCCCATTCTACCTGGTCTGCCTGATGATGTGGCAAAACATTGCCTTGCACTTGTGCCTCGTTCTAACGTCCCAACTATTGGTGGTGTCTGTAAGAGATGGAGATCATTTATTCAAAGCAAAGAGTTCATTACTGTGCGAAAATTGGCAGGGATGGTTGAGGAATGGCTCTATTTCTTAACAATGGATACTGAAGGAGAGGGAACTCATTGGGAGGTTATGGATCGTCCCAGTCATAAATGCCAAGCTCTTCCACCGATGCCTGGTCCGGTAAAGGCTGGATTCGGAGTGGTTGTTCTTAATGGAAAGCTTCTTGTTATTGCTGGATATTCAACTACAGATAGAAGTACCTTTGCCTCAGCAGAGGTTTACCAATATGACTCGCTCCTCAACAATTGGAGCAGACTATCAAAAATGAATGTGGCTCGTTATGACTTTGCATGTGCCGAAGTCAATGGCTTGGTTTATGCTGTAGGAGGCTATGGATTGGATGGTGAAATTCTCTCTAGTGCTGAGGTGTACGACCCTGACACCGACAAATGGACACTGATAGAGAGTGTCCGGCGCCCAAGATGGGGTTGCTTTGCCTGTTCATTGGATGGTAAGCTCTATGTCATGGGTGGAAGGTCGAGCTTTACAATTGGAAACTCCAAGTTTGTTGATGTTTATGACCCTGAAGTCCACAGCTGGGGTGAGTTCAAGAACGGCTGTGTTATGGTCACAGCGCACGCAGTATTAGGAAAGAAATTGTTCTGTATGGAGTGGAAGAACCAGAGGAAGCTAGCAATATTCTGTTCTGAAGACAATTCGTGGAAAATGGTACCACTTCCACTCACTGGTAGCTCCAGTGTTGATTTTAGATTTGGGATATTTGATGAAAAGCTGTTGCTATTCTCACTGGAAGCAGGACCCTCTTATCAAACTTTGTTGTATGATCCAAATGCAGCTAAAGGGTCAGAGTGGCAAATTTCTGATATAAAACCATCTGGTGTGTTCTTGTGCAGTGTAACAATCAAGGCATGA 1158 0.4421 MPGFVAGKKRSTGRNMCFTNLANQDKLTCLQTNHFFASEVPENDDSPILPGLPDDVAKHCLALVPRSNVPTIGGVCKRWRSFIQSKEFITVRKLAGMVEEWLYFLTMDTEGEGTHWEVMDRPSHKCQALPPMPGPVKAGFGVVVLNGKLLVIAGYSTTDRSTFASAEVYQYDSLLNNWSRLSKMNVARYDFACAEVNGLVYAVGGYGLDGEILSSAEVYDPDTDKWTLIESVRRPRWGCFACSLDGKLYVMGGRSSFTIGNSKFVDVYDPEVHSWGEFKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFCSEDNSWKMVPLPLTGSSSVDFRFGIFDEKLLLFSLEAGPSYQTLLYDPNAAKGSEWQISDIKPSGVFLCSVTIKA* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0426 385 SUPERFAMILY F-box domain 36 88 IPR036047 GO:0005515
Amo10g0426 385 SUPERFAMILY Kelch motif 99 352 IPR015915 GO:0005515
Amo10g0426 385 Gene3D - 85 381 IPR015915 GO:0005515
Amo10g0426 385 SMART kelc_smart 148 198 IPR006652 GO:0005515
Amo10g0426 385 SMART kelc_smart 199 246 IPR006652 GO:0005515
Amo10g0426 385 Pfam Kelch motif 238 275 IPR006652 GO:0005515
Amo10g0426 385 Pfam Kelch motif 138 185 IPR006652 GO:0005515
Amo10g0426 385 Pfam Kelch motif 187 230 IPR006652 GO:0005515
Amo10g0426 385 PANTHER KELCH REPEAT F-BOX PROTEIN 1 385 - -
Amo10g0426 385 Pfam F-box domain 51 88 IPR001810 GO:0005515
Amo10g0426 385 SMART fbox_2 52 92 IPR001810 GO:0005515
Amo10g0426 385 PANTHER OS02G0202900 PROTEIN 1 385 IPR045887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0426 Amo-Chr10 4354498 4355986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0426 52 230 Miscellaneous Gene Families AT4G33900 30.102 8.57e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0426 - - gmx:100802912 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0902 20 14957748 14959587 Amo10g0426 10 4354498 4355986 hybridization