Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0720 ATGGATTCATTCTCTGTTGTGTTGTGTGTGTTAGGGTTAGTGATTGTGGGTCATGTGGCTTATGCCCAAGACTCACAAGATTACCTTGATGCTCACAACGCAGCAAGATCCGAGGTTGGTGTTCCAAATTTGTCTTGGGATGACAAAGTTGCAGCCTATGCACAAAACTACGCCAATCAGCGAAAAAGTGATTGCCAATTGGTCCATTCCAATGGCCAATATGGGGAGAACATTGCAGTGGGCAGCGCTGACTTTTCCGGCACGGATGCCGTGAAATTGTGGGTGGACGAAAAGGAATACTATGACTATGGTCCTAATAGTTGTGTGAGTGCCCAAGTCTGTGTCCACTACATACAAGTAATTTGGCGTGACTCGGTAAGACTTGGGTGCGCCAAAGTAACTTGCGATAATAATGCGGGCACTTTTGTTCTTTGCAGCTATGATCCAGGTGCTAATATCACCGATCAAAAGCCTTACTAA 480 0.4562 MDSFSVVLCVLGLVIVGHVAYAQDSQDYLDAHNAARSEVGVPNLSWDDKVAAYAQNYANQRKSDCQLVHSNGQYGENIAVGSADFSGTDAVKLWVDEKEYYDYGPNSCVSAQVCVHYIQVIWRDSVRLGCAKVTCDNNAGTFVLCSYDPGANITDQKPY* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0720 159 Pfam Cysteine-rich secretory protein family 29 147 IPR014044 -
Amo20g0720 159 Gene3D CAP 23 159 IPR035940 -
Amo20g0720 159 CDD CAP_PR-1 25 159 - -
Amo20g0720 159 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 3 159 IPR001283 -
Amo20g0720 159 SMART SCP_3 23 155 IPR014044 -
Amo20g0720 159 SUPERFAMILY PR-1-like 3 159 IPR035940 -
Amo20g0720 159 PRINTS Allergen V5/Tpx-1 family signature 44 62 IPR001283 -
Amo20g0720 159 PRINTS Allergen V5/Tpx-1 family signature 90 103 IPR001283 -
Amo20g0720 159 PRINTS Allergen V5/Tpx-1 family signature 114 130 IPR001283 -
Amo20g0720 159 PRINTS Allergen V5/Tpx-1 family signature 142 155 IPR001283 -
Amo20g0720 159 PANTHER PATHOGENESIS-RELATED PROTEIN 1B-LIKE 3 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0720 Amo-Chr20 10492665 10493144 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0720 K13449 - gmx:547547 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0720 20 10492665 10493144 Amo20g0720 20 10492665 10493144 ECH
Amo20g0720 20 10492665 10493144 Amo10g0015 10 230467 230949 hybridization