Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4254 ATGGGGCTTTGGTTCTGGGATGCTTTTGTCAACTGGTTACGCAGTTTCTTTTTCAAGCAAGAGATGGAGCTATCTCTGATTGGCCTTCAGAATGCTGGCAAAACTTCCCTTGTAAATGTTATTGCGACTGGTGGATTTAGCGAAGACATGATCCCGACGGTAGGATTTAACATGAAAAAGGTCACCAAAGGGAATGTGACAATCAAATTATGGGACCTTGGAGGCCAACCAAGGTTTCGCAGTATGTGGGAGAGATACTGCCGCGCCGTTTCAGCTATTGTTTATGTTGTTGATGCAGCTGATCATGACAACATACCTACCTCTAGAAATGAGCTTCATGACTTGTTGAGCAAGCATTCTTTAAATGGTATTCCCCTGTTGGTTCTTGGTAACAAGATCGACAAACCAGGGGCTTTGTCTGAGCAAGAGCTGATGGAGCAAATGGAACTAAAATCCATCAATGAAAGAGAAGTCTCTTGCTACATGATCTCATGTAAAAACTCCACAAACATTGACACAGTTGTTGATTGGCTTATAAAACATTCAAAATCAAAGAATTGA 561 0.4171 MGLWFWDAFVNWLRSFFFKQEMELSLIGLQNAGKTSLVNVIATGGFSEDMIPTVGFNMKKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADHDNIPTSRNELHDLLSKHSLNGIPLLVLGNKIDKPGALSEQELMEQMELKSINEREVSCYMISCKNSTNIDTVVDWLIKHSKSKN* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4254 186 Pfam ADP-ribosylation factor family 13 180 IPR006689 GO:0003924|GO:0005525
Amo19g4254 186 SMART rab_sub_5 22 185 - -
Amo19g4254 186 ProSiteProfiles small GTPase Arf family profile. 15 182 - -
Amo19g4254 186 SMART sar_sub_1 6 182 IPR006689 GO:0003924|GO:0005525
Amo19g4254 186 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8A 5 186 - -
Amo19g4254 186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 184 IPR027417 -
Amo19g4254 186 TIGRFAM small_GTP: small GTP-binding protein domain 20 177 IPR005225 GO:0005525
Amo19g4254 186 ProSiteProfiles small GTPase Rab1 family profile. 17 186 - -
Amo19g4254 186 Gene3D - 3 183 IPR027417 -
Amo19g4254 186 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 5 186 - -
Amo19g4254 186 PRINTS GTP-binding SAR1 protein signature 23 46 IPR006689 GO:0003924|GO:0005525
Amo19g4254 186 PRINTS GTP-binding SAR1 protein signature 79 104 IPR006689 GO:0003924|GO:0005525
Amo19g4254 186 PRINTS GTP-binding SAR1 protein signature 124 145 IPR006689 GO:0003924|GO:0005525
Amo19g4254 186 ProSiteProfiles small GTPase SAR1 family profile. 1 186 - -
Amo19g4254 186 SMART arf_sub_2 5 186 - -
Amo19g4254 186 CDD Arl10_like 23 181 IPR044154 GO:0003924|GO:0005525|GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4254 Amo-Chr19 159268137 159270566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4254 26 174 Miscellaneous Gene Families AT5G05670 29.375 3.54e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4254 K07955 - cit:102631088 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4254 19 159268137 159270566 Amo19g4254 19 159268137 159270566 ECH
Amo05g0574 05 6654735 6657729 Amo19g4254 19 159268137 159270566 PCT