Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0574 ATGGGGCTGTGGGAAGCTTTTCTCAATTGGCTACGCAGCCTATTCTTCAAGCAGGAAATGGAGCTATCTCTGATAGGACTCCAGAATGCTGGAAAGACTTCCCTTGTAAATGTTGTTGCTACTGGCGGATATAGTGAGGACATGATTCCCACTGTGGGATTCAATATGAGGAAGGTAACAAAAGGCAATGTTACAATAAAGCTATGGGATCTTGGAGGGCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCAGTTTCTGCTATTGTTTATGTTGTTGATGCTGCTGATCCAGATAACCTTAGCATATCAAGAAGCGAACTTCATGATTTGCTGAGTAAGCCATCATTGAATGGCATCCCTCTGTTGGTGTTGGGGAATAAGATCGACAAAGCAGGGGCTCTGTCTAAGCAAGCTTTGACTGATCAGATGGATCTGAAGTCAATCACTGACAGAGAAGTTTGCTGCTTCATGATCTCTTGCAAAAACTCGACGAACATTGATTCTGTTATTGATTGGCTTGTGAAGCATTCCAAGTCAAAGAGCTGA 555 0.4396 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLNGIPLLVLGNKIDKAGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0574 184 PANTHER SMALL GTPASE SUPERFAMILY, RAB TYPE-RELATED 1 184 - -
Amo05g0574 184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 181 IPR027417 -
Amo05g0574 184 Pfam ADP-ribosylation factor family 9 178 IPR006689 GO:0003924|GO:0005525
Amo05g0574 184 CDD Arl10_like 21 179 IPR044154 GO:0003924|GO:0005525|GO:0015031
Amo05g0574 184 ProSiteProfiles small GTPase Rab1 family profile. 15 184 - -
Amo05g0574 184 PRINTS GTP-binding SAR1 protein signature 21 44 IPR006689 GO:0003924|GO:0005525
Amo05g0574 184 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Amo05g0574 184 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Amo05g0574 184 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 184 - -
Amo05g0574 184 SMART arf_sub_2 1 184 - -
Amo05g0574 184 ProSiteProfiles small GTPase Arf family profile. 13 180 - -
Amo05g0574 184 Gene3D - 1 181 IPR027417 -
Amo05g0574 184 SMART rab_sub_5 20 183 - -
Amo05g0574 184 SMART sar_sub_1 4 180 IPR006689 GO:0003924|GO:0005525
Amo05g0574 184 TIGRFAM small_GTP: small GTP-binding protein domain 18 176 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0574 Amo-Chr5 6654735 6657729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0574 24 147 Miscellaneous Gene Families AT5G05670 30.370 3.94e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0574 K07955 - gmx:100499793 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0574 05 6654735 6657729 Amo19g4254 19 159268137 159270566 PCT