Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3562 ATGAGGGTGCACTCGAATGATTTGCTTCAGCTCTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTGATGTTGCGTGCAAAAAATCAGGCTCTTGTCCAAATGCAAGATGTTGCTTCAGCCGTTAATTCTTTACAATTTTATGCAAATGTTCAGCCAAGCATAAGGGGGAGGAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACATCAATGGATCAAAATCAAGGGCGTGGAGATGAGCCAAATCGAATTCTCTTAGTTACAATTCACCACATGATGTATCCTATAACAGTGGATGTGCTATATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGAGCATTGGCTCAAGCGATAAAGGGCATCTGGTATCATGTGGATAGTGGGGGCTTCAATCGGAAATTRCACAATCCCCTTGTTCCAACCCCCTTAACCACTCACTACTTGCCTTGGGGTCGTTTTCAGGCTCTTATCCAGTATCAGTCACGTCAGCATGCTGTTGTCGCRAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAACTACAAGTGAACTACAACAATGACCATTCAAGGGACTTTACGAACCCAAATCTTCCTACAGAGCAGAAAGGCAGACCGTCACAACCTGGATATGGCGATACAGTTGGATATCCTCAGATGGCCAATGCTGCAGCCATTGCAGCTGCCTTCGGGGGTGGTTTGCCTCCTGGAGTAACCGGGACAAATGACCGATGTACAATTCTTGTCTCAAATCTTAATCCTGAYAGAATAGATGAGGATAAGCTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGGATTAAGCTTCTCCGGAATAAACCAGATCATGCACTTATCCAGATGGGGGATGGTTTCCAAGCTGAATTGGCAGTGCACTTTCTGAAGGGAGCCACGTTGTTTGGGAAGCGATTAGAAGTCAACTTCTCGAAACATCCTAACATAACCCCAGGTGCTGACACGCATGAGTATGCCAATTCAAACCTCAACCGTTTCAACCGTAATGCTGCTAAGAACTACCGTTATTGTTGCTCCCCGACAAAGATTATCCATTTGTCAACACTCCCWCAAGATGTCACCGAAGAYGAGATTCTGAACCTCCTGGAGGAGCATGGAACTATTGTGAACAGCAAAGTCTTTGAGATGAATGGGAAAAAGCAGGCTCTGGTTCAGTTCGAGACTGAGGAACTGGCTACCGATGCTCTTGTATGCAAGCATGCAAGCTCACTTTCTGGTTCAGTAATCCGCATCTCATTCTCACAGCTGCAGAATATATGA 1371 0.4427 MRVHSNDLLQLFQPFGVITKLVMLRAKNQALVQMQDVASAVNSLQFYANVQPSIRGRNVYVQFSSHQELTSMDQNQGRGDEPNRILLVTIHHMMYPITVDVLYQVFSPHGSVEKIVTFQKSAGALAQAIKGIWYHVDSGGFNRKLHNPLVPTPLTTHYLPWGRFQALIQYQSRQHAVVARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDHSRDFTNPNLPTEQKGRPSQPGYGDTVGYPQMANAAAIAAAFGGGLPPGVTGTNDRCTILVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGATLFGKRLEVNFSKHPNITPGADTHEYANSNLNRFNRNAAKNYRYCCSPTKIIHLSTLPQDVTEDEILNLLEEHGTIVNSKVFEMNGKKQALVQFETEELATDALVCKHASSLSGSVIRISFSQLQNI* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3562 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 82 - -
Amo19g3562 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 355 - -
Amo19g3562 456 SUPERFAMILY RNA-binding domain, RBD 267 450 IPR035979 GO:0003676
Amo19g3562 456 Pfam RRM-like domain 164 200 IPR021790 -
Amo19g3562 456 SMART rrm1_1 270 339 IPR000504 GO:0003723
Amo19g3562 456 SMART rrm1_1 380 449 IPR000504 GO:0003723
Amo19g3562 456 SMART rrm1_1 1 62 IPR000504 GO:0003723
Amo19g3562 456 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 3 125 - -
Amo19g3562 456 Gene3D - 2 83 IPR012677 -
Amo19g3562 456 Gene3D - 363 456 IPR012677 -
Amo19g3562 456 SUPERFAMILY RNA-binding domain, RBD 73 215 IPR035979 GO:0003676
Amo19g3562 456 CDD RRM4_PTBPH3 372 450 - -
Amo19g3562 456 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 163 455 - -
Amo19g3562 456 CDD RRM3_PTBPH3 268 343 IPR034797 -
Amo19g3562 456 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 125 - -
Amo19g3562 456 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 163 455 - -
Amo19g3562 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 343 IPR000504 GO:0003723
Amo19g3562 456 MobiDBLite consensus disorder prediction 212 238 - -
Amo19g3562 456 MobiDBLite consensus disorder prediction 212 228 - -
Amo19g3562 456 Gene3D - 84 227 IPR012677 -
Amo19g3562 456 Gene3D - 266 362 IPR012677 -
Amo19g3562 456 SUPERFAMILY RNA-binding domain, RBD 3 78 IPR035979 GO:0003676
Amo19g3562 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 384 446 IPR000504 GO:0003723
Amo19g3562 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 379 453 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3562 Amo-Chr19 149912984 149918094 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3562 K14948 - gmx:100819672 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3562 19 149912984 149918094 Amo19g3562 19 149912984 149918094 ECH
Amo19g3538 19 149414720 149420051 Amo19g3562 19 149912984 149918094 PCT
Amo19g3562 19 149912984 149918094 Amo19g3538 19 149414720 149420051 PCT