Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3538 ATGGCTGAACCTTCCAAGGTCATCCATGTACGAAACGTGGGGCATGAGATATCCGAAAATGATTTGCTTCAGCTCTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTGATGTTGCGTGCAAAAAATCAGGCTCTTGTCCAAATGCAAGATGTTGCTTCAGCCGTTAATTCTTTACAATTTTATGCAAATGTTCAGCCAAGCATAAGGGGGAGGAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACATCAATGGATCAAAATCAAGGGCGTGGAGATGAGCCAAATCGAATTCTCTTAGTTACAATTCACCACATGATGTATCCTATAACAGTGGATGTGCTATATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGTTTTCAGGCTCTTATCCAGTATCAGTCACGTCAGCATGCTGTTGTCGCGAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAACTACAAGTGAACTACAACAATGACCGTTCAAGGGACTTTACGAACCCAAATCTTCCTACAGAGCAGAAAGGCAGACCGTCACAACCTGGATATGGCGATACAGTTGGATATCCTCAGATGGCCAATGCTGCAGCCATTGCAGCTGCCTTCGGGGGTGGTTTGCCTCCTGGAGTAACCGGGACAAATGACCGATGTACAATTCTTGTCTCAAATCTTAATCCTGATAGAATAGATGAGGATAAGCTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGGATTAAGCTTCTCCGGAATAAACCAGATCATGCACTTATCCAGATGGGGGATGGTTTCCAAGCTGAATTGGCAGTGCACTTTCTGAAGGGAGCCACGTTGTTTGGGAAGCGATTAGAAGTCAACTTCTCGAAACATCCTAACATAACCCCAGGTGCTGACACGCATGAGTATGCCAATTCAAACCTCAACCGTTTCAACCGTAATGCTGCTAAGAACTACCGTTATTGTTGCTCCCCGACAAAGATTATCCATTTGTCAACACTCCCCCAAGATGTCACCGAAGATGAGATTCTGAACCTCCTGGAGGAGCATGGAACTATTGTGAACAGCAAAGTCTTTGAGATGAATGGGAAAAAGCAGGCTCTGGTTCAGTTCGAGACTGAGGAACTGGCTACCGATGCTCTTGTATGCAAGCATGCAAGCTCACTTTCTGGTTCAGTAATCCGCATCTCATTCTCACAGCTGCAGAATATATGA 1293 0.4401 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALVQMQDVASAVNSLQFYANVQPSIRGRNVYVQFSSHQELTSMDQNQGRGDEPNRILLVTIHHMMYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQHAVVARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDTVGYPQMANAAAIAAAFGGGLPPGVTGTNDRCTILVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGATLFGKRLEVNFSKHPNITPGADTHEYANSNLNRFNRNAAKNYRYCCSPTKIIHLSTLPQDVTEDEILNLLEEHGTIVNSKVFEMNGKKQALVQFETEELATDALVCKHASSLSGSVIRISFSQLQNI* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3538 430 CDD RRM4_PTBPH3 346 424 - -
Amo19g3538 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 427 IPR000504 GO:0003723
Amo19g3538 430 CDD RRM3_PTBPH3 242 317 IPR034797 -
Amo19g3538 430 Gene3D - 98 201 IPR012677 -
Amo19g3538 430 MobiDBLite consensus disorder prediction 186 212 - -
Amo19g3538 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 317 IPR000504 GO:0003723
Amo19g3538 430 MobiDBLite consensus disorder prediction 186 202 - -
Amo19g3538 430 Pfam RRM-like domain 95 174 IPR021790 -
Amo19g3538 430 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Amo19g3538 430 SMART rrm1_1 101 170 IPR000504 GO:0003723
Amo19g3538 430 SMART rrm1_1 354 423 IPR000504 GO:0003723
Amo19g3538 430 SMART rrm1_1 7 76 IPR000504 GO:0003723
Amo19g3538 430 SMART rrm1_1 244 313 IPR000504 GO:0003723
Amo19g3538 430 SUPERFAMILY RNA-binding domain, RBD 241 426 IPR035979 GO:0003676
Amo19g3538 430 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 429 - -
Amo19g3538 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 58 IPR000504 GO:0003723
Amo19g3538 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 420 IPR000504 GO:0003723
Amo19g3538 430 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 429 - -
Amo19g3538 430 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Amo19g3538 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Amo19g3538 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 329 - -
Amo19g3538 430 Gene3D - 337 430 IPR012677 -
Amo19g3538 430 Gene3D - 1 97 IPR012677 -
Amo19g3538 430 Gene3D - 240 336 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3538 Amo-Chr19 149414720 149420051 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3538 K14948 - gmx:100819672 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3538 19 149414720 149420051 Amo19g3562 19 149912984 149918094 PCT
Amo19g3562 19 149912984 149918094 Amo19g3538 19 149414720 149420051 PCT