Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1543 ATGGCCGAAACGAGTGAAAAGGAACGGAGGATCCTGGTGGCGGTGGATGAAGGGGAAGAGAGCATGTACGCGCTCTCATGGTGCGTCAACAACCTTGTTTTTGAGAACTCAAAGGACACACTCATCCTTCTCTATGTTAAGCCCCCTCGCGCTGTCTATTCCGCCTTCGATGGTACAAGTTATTTGTTTTCTTCTGATATAACGGCGACTATGGATAAGTATAGCCAACAAGTTGCTGAGTCCGTCTTAGAGAAAGCCAAGAGACTCTGTAACAACATCCAGAATGTGGAAACAAAAATAGGGAATGGAGACGCGAGGGACGTGATCTGTGAGATGGTTCAGAAGTTGAATGCGGATATTCTGGTCATGGGAAGTCACGGCTATGGTCCCATCAAGAGGGCTTTTCTTGGAAGTGTGAGCAATCACTGTGCGCAGAATGTGAAGTGCCCCGTTTTGATAGTGAAGAAGCCCAAAGACGCTTGA 483 0.4762 MAETSEKERRILVAVDEGEESMYALSWCVNNLVFENSKDTLILLYVKPPRAVYSAFDGTSYLFSSDITATMDKYSQQVAESVLEKAKRLCNNIQNVETKIGNGDARDVICEMVQKLNADILVMGSHGYGPIKRAFLGSVSNHCAQNVKCPVLIVKKPKDA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1543 160 Pfam Universal stress protein family 9 155 IPR006016 -
Amo19g1543 160 Coils Coil 79 99 - -
Amo19g1543 160 CDD USP_Like 10 154 - -
Amo19g1543 160 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 159 - -
Amo19g1543 160 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 157 - -
Amo19g1543 160 PRINTS Universal stress protein signature 8 26 IPR006015 -
Amo19g1543 160 PRINTS Universal stress protein signature 115 127 IPR006015 -
Amo19g1543 160 PRINTS Universal stress protein signature 133 155 IPR006015 -
Amo19g1543 160 PANTHER OS05G0357525 PROTEIN 1 159 - -
Amo19g1543 160 Gene3D HUPs 3 160 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1543 Amo-Chr19 35181824 35183240 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1543 - - gmx:100305594 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1543 19 35181824 35183240 Amo09g0965 09 19254307 19255927 hybridization
Amo16g0426 16 6851716 6854298 Amo19g1543 19 35181824 35183240 PCT
Amo19g1543 19 35181824 35183240 Amo16g0426 16 6851716 6854298 PCT