Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1246 ATGGAAGATTTTGGTGGTTCCGGGTTTGATGGCCTTAGTAATGCTGTGAGGAGGAAGAGGAGTCAAACTTCTCGCAGGCCTCGACCAGATTCGCAGCCTGTACCTGATGGTACCGACTTGTCTCCCTTGTCGTCAACACCCCCTTCAGATGATGTTAGCAGGGTCTCTAGTGAAGAGAATGCTGAAGACGATAAATCCCATAAGGATGGTGGGTTCAATGTGTTTTATAGTAATGAGCCTGGGCGAAGCAGCTTACAAAACAAACGCTGTAGCGAGGGTGTTCTTGCTCCAGCTAATTGGAAGGGTTCTAGCAAATCAAAGGATAGCTTAGAATCAGAATTGGGAAATGCAGAGATGTATGGTGGAAGTAATCCAGATAGTCCGAGTTTAGGGCAGTTTGGTGTTTCTCAGGATCCATTAGGGAATGAGAATCGTGTTAAAAAGGTGAAGCTGAAGGTTGGTGGTGTTACACGTACTATTCAAGCCAACTCTGCATCAAACAGTACTTCAGCTAGTGGATCAACTACAAAGAGCTCTCGATCATCAGATGCCACTAGATCACGCCACAAGCATCAGAGCAATTCAGATGATAACCAGTCTCCCTTGGATAAGAGAAGTGGCCTGCAAGGCCTGCCGTGGAAGGATTTCTCAAGTCAGGACTCATTAATTGGGAGGTTATCTGGAAAAAATAAATTAAGCAAGCAAGGAGACAAGTCTGAATCAGTCCGGAAGAGCAAGCGAGTACCAAAGAGGCGTGTACTTGACGACGAATTTGGTGATGAGGATGATGAGGATGATGAGATTCGTTATCTGGAAAAGCTGAAAACATCAAAAGTTTCTGCTGTATATAGAGATGAAGAGGAATTAGGCAAGAAACATAAAAAGCTTTCTAGCATGGAAAATGCAGCCTCAACAAAATCAAGCAAAGATGGGAAGAAAAGGTTTAGACCAGATAGAGTGTATGAGGATGTGGATTATGAGGAAGAGGATGAGTCTGGGTCTGATGTTGAGGTTGAGGATAAGAAAAAGAAAAAACAGAGGAAGGAATCTGTTGATGTTTTGATGGACAGTAAAAGGGAAATAACTCTAACTACACGTCAACGGGCTCTTCAATCCAGCAAAGATGCCTCTGCACCTGGTTCAAGTTTAATTGAGTTCCCCAATGGATTACCACCTGCCCCGCCTAGAAAGCAAAAGGAGAAGCTTACAGAAGTGGAGCAGCAACTAAAGAAAGCTGAGGCTGCCCAGAGGCGTAAAATGCAAAATGAGAAGGCTGCCCGGGAGTCTGAGGCTGAAGCTATAAGAAAAATTCTTGGTCAAGATTCTAGTAGGAAGAAGCGGGAAGAGAAAATGAAGAAACGCCAAGAAGAATTGGCTCAGAGGGCAGCCAATGCACAAATGCTTGCATCAAACACTATTAGATATGTGATGAGTCCTAATGGTACAGTTGTGACATTTCCTGATGAAATGGGCCTCCCTAGTATATTCAATTCAAAACCGTGCAGTTATCCTCCATCACGGGAGAGATGTGCCGGTCCGTCATGTCCCAACCCTTACAAGTATCGCGATTCAAAATCAAAGCTTCCTCTTTGCAGTCTCCAATGTTACAAAGCAGTCCGAGAGAAGATGGCTGCTGAAGCTATCTGTTGA 1650 0.443 MEDFGGSGFDGLSNAVRRKRSQTSRRPRPDSQPVPDGTDLSPLSSTPPSDDVSRVSSEENAEDDKSHKDGGFNVFYSNEPGRSSLQNKRCSEGVLAPANWKGSSKSKDSLESELGNAEMYGGSNPDSPSLGQFGVSQDPLGNENRVKKVKLKVGGVTRTIQANSASNSTSASGSTTKSSRSSDATRSRHKHQSNSDDNQSPLDKRSGLQGLPWKDFSSQDSLIGRLSGKNKLSKQGDKSESVRKSKRVPKRRVLDDEFGDEDDEDDEIRYLEKLKTSKVSAVYRDEEELGKKHKKLSSMENAASTKSSKDGKKRFRPDRVYEDVDYEEEDESGSDVEVEDKKKKKQRKESVDVLMDSKREITLTTRQRALQSSKDASAPGSSLIEFPNGLPPAPPRKQKEKLTEVEQQLKKAEAAQRRKMQNEKAARESEAEAIRKILGQDSSRKKREEKMKKRQEELAQRAANAQMLASNTIRYVMSPNGTVVTFPDEMGLPSIFNSKPCSYPPSRERCAGPSCPNPYKYRDSKSKLPLCSLQCYKAVREKMAAEAIC* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1246 549 MobiDBLite consensus disorder prediction 122 139 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 157 181 - -
Amo19g1246 549 PANTHER HIT ZINC FINGER AND PAPA-1-LIKE DOMAIN-CONTAINING PROTEIN 1 549 - -
Amo19g1246 549 Coils Coil 402 432 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 336 363 - -
Amo19g1246 549 Pfam HIT zinc finger 507 537 IPR007529 -
Amo19g1246 549 MobiDBLite consensus disorder prediction 182 198 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 285 458 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 306 322 - -
Amo19g1246 549 Pfam PAPA-1-like conserved region 406 490 IPR006880 GO:0031011
Amo19g1246 549 MobiDBLite consensus disorder prediction 364 379 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 37 54 - -
Amo19g1246 549 PANTHER INO80 COMPLEX SUBUNIT B 1 549 IPR029523 GO:0006338|GO:0031011
Amo19g1246 549 SMART PAPA_1_2 406 490 IPR006880 GO:0031011
Amo19g1246 549 Coils Coil 445 465 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 397 458 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 1 265 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 231 257 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 285 299 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 212 228 - -
Amo19g1246 549 MobiDBLite consensus disorder prediction 55 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1246 Amo-Chr19 24990930 24993664 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1246 - - gmx:100814323 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1246 19 24990930 24993664 Amo16g0797 16 12906393 12910315 ECH
Amo19g1246 19 24990930 24993664 Amo19g1246 19 24990930 24993664 ECH
Amo16g0797 16 12906393 12910315 Amo19g1246 19 24990930 24993664 ECH