Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0797 ATGGAGGATTTAGGTGGTACCCGATTTGATAGCCTCAACAATGCTGTAAGGAGGAGGAGGAGTCAAACTTCACGCAGGCCTCGACCTGATTCACAGCCTGTGTCGGAAGAGCAAGAGCTGTCTCCCTTGTCAGCAACCCCCCCTTCAGAGGATGCTGGCAAGGCCTCCAGCGACGAGATTGCTGGTTATGATACTAATTCCAAGAGAAAAGAATTCAGTCTTAATCATTGTGTTTCTCAGGCCTCCTCTGCTACTGGAGCTGAGGATAATAAATCCCTAAGGAAGAGTAATAAGGATGAAGGATTCCATGTGTTATATAATAATGAACCTGGAAGGAGTGGTTCGAATAATAAACGCTGTAGCGAAGGTGTTCTTGCTCCAGCTAATTGGAAAGGGTCTAATAAATCAAAGGAGAGCTTTGAGTCAGAATCAAGAAATGCAGATATGTATGGTGAAAGGAATCCTGAGAGTATGAGTGTGGGGCAGCTTGGTGTCACCCAAGATGGATTGGGGAATAAGAACAAGGTTAAGAAGGTTAAACTCAGGGTTGGTGGTGTGACACGTACCATTCAATCTAACTCGTCGTCTAATGGTGCTTCAGGAATTGGAACAACTATGAAAAGTACACGCTCTTCAGATGCCTCAAGATCACGCCAAAAGCAACAGAATAATTCTGACGATAATCATTCTCCTTCTGAAAAGAGGGGCGGCTTACAAGGCCTTCGGTGGAAGGGATCCTCAAGGGGTTGTTTTAGTCTTGGGAAGGAGGAGTCACTGATGGGGAGGACATCTGGAAAAAACACATCTGGTCAGAAAAGAGACAAATCTGAACCAGTTCGTAAGAGCAAGCGAGTACCAAAAAGGCGAGTACTGGATGGAGAATTTGGTGATGACGATGATGAGGATGATGAGATTCGGTATTTGGAGAAGCTGAAAACATCGAAAGTTTCTGCAGTGTATAGAGATGAAGAAGAATTGAGTAAGAAGCATCGAAAACTCTCTAGTGTATCCAATTTGGAAAATGCTGCATCATCAAGATCAGGCAGAGATGGCAAGAAAAGGTCTAGATTCGAGGACACTGACTATGAGGCTGAAGAGGAGTCAGGTTCTGATGGCGAGCTTGAGGACAAGAAAAAGAAAAAACAGAGGAAAGAATCAGTTGATGTATTGATGGATGGTAAGAAGGAAATGACTCTCACTACACGTCAACGGGCCCTTCAATCAAGCAAAGATGCCTCAGCATCTGGTGCAAGTTTAATTGAGTTTCCCAATGGATTACCACCTGCCCCACCTAGAAAGCAAAAGGAGAAGCTTACAGAGGTGGAGCAGCAACTGAAGAAAGCCGAGGCTGCTCAAAGGCGTAAAATGCAGGTTGAGAAGGCTGCCAGAGAATCTGAGGCTGAAGCTATCAGAAAAATACTTGGTCAAGATTCCAGCAGGAAGAAGCGAGAAGAGAAAATAAAGAAGCGTCAACAAGAACTGGCAGAGGAGAAAGCAGCCAATGCAAGAATGCTTGCATCAAACACCGTGAGATATGTGATGGGTCCCTCTGGGACAGTTGTGACCTTTCCCGAGGAAATGGGGCTCCCTAGCATATTGAACTCCAAACCCATCAGTTATCCTCCACCGCGTGAGAAGTGTGCTGGTCCATCTTGTAGCAATCCATATAAGTATCGGGATTCAAAATCAAAGCTTCCTCTTTGCAGTCTCCAATGCTACAAGGCAGTCCAGGAGAATATGGCAGCCGCAACTAGAGCATGA 1761 0.4526 MEDLGGTRFDSLNNAVRRRRSQTSRRPRPDSQPVSEEQELSPLSATPPSEDAGKASSDEIAGYDTNSKRKEFSLNHCVSQASSATGAEDNKSLRKSNKDEGFHVLYNNEPGRSGSNNKRCSEGVLAPANWKGSNKSKESFESESRNADMYGERNPESMSVGQLGVTQDGLGNKNKVKKVKLRVGGVTRTIQSNSSSNGASGIGTTMKSTRSSDASRSRQKQQNNSDDNHSPSEKRGGLQGLRWKGSSRGCFSLGKEESLMGRTSGKNTSGQKRDKSEPVRKSKRVPKRRVLDGEFGDDDDEDDEIRYLEKLKTSKVSAVYRDEEELSKKHRKLSSVSNLENAASSRSGRDGKKRSRFEDTDYEAEEESGSDGELEDKKKKKQRKESVDVLMDGKKEMTLTTRQRALQSSKDASASGASLIEFPNGLPPAPPRKQKEKLTEVEQQLKKAEAAQRRKMQVEKAARESEAEAIRKILGQDSSRKKREEKIKKRQQELAEEKAANARMLASNTVRYVMGPSGTVVTFPEEMGLPSILNSKPISYPPPREKCAGPSCSNPYKYRDSKSKLPLCSLQCYKAVQENMAAATRA* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0797 586 MobiDBLite consensus disorder prediction 400 415 - -
Amo16g0797 586 Pfam HIT zinc finger 543 574 IPR007529 -
Amo16g0797 586 PANTHER HIT ZINC FINGER AND PAPA-1-LIKE DOMAIN-CONTAINING PROTEIN 1 583 - -
Amo16g0797 586 MobiDBLite consensus disorder prediction 1 436 - -
Amo16g0797 586 Coils Coil 480 500 - -
Amo16g0797 586 MobiDBLite consensus disorder prediction 451 497 - -
Amo16g0797 586 MobiDBLite consensus disorder prediction 305 335 - -
Amo16g0797 586 Coils Coil 438 468 - -
Amo16g0797 586 MobiDBLite consensus disorder prediction 136 150 - -
Amo16g0797 586 PANTHER INO80 COMPLEX SUBUNIT B 1 583 IPR029523 GO:0006338|GO:0031011
Amo16g0797 586 MobiDBLite consensus disorder prediction 451 500 - -
Amo16g0797 586 MobiDBLite consensus disorder prediction 186 219 - -
Amo16g0797 586 SMART PAPA_1_2 442 527 IPR006880 GO:0031011
Amo16g0797 586 Pfam PAPA-1-like conserved region 442 527 IPR006880 GO:0031011
Amo16g0797 586 MobiDBLite consensus disorder prediction 268 294 - -
Amo16g0797 586 MobiDBLite consensus disorder prediction 72 90 - -
Amo16g0797 586 MobiDBLite consensus disorder prediction 346 361 - -
Amo16g0797 586 MobiDBLite consensus disorder prediction 371 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0797 Amo-Chr16 12906393 12910315 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0797 - - adu:107492293 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0797 16 12906393 12910315 Amo16g0797 16 12906393 12910315 ECH
Amo19g1246 19 24990930 24993664 Amo16g0797 16 12906393 12910315 ECH
Amo16g0797 16 12906393 12910315 Amo19g1246 19 24990930 24993664 ECH