Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0997 ATGCTTCCCATTCTCTTCCTCATCCCACTTCTCTTATCCACAACTTGCCATGCATCAGTCCAAGACTTCTGTGTGGCAGACACCACAGCATCAGACACCCCTGCAGGTTTCCCCTGCAAGCCGGAAGCCAATGTAACCTCCTCCGACTTCGTCTACACCGGCCTCTCCGTCCCYGGAAAAATCATTGMCCTCATAAACGCCGCCGTSACGCCGGCATTTGTCASCCAATTCCCAGGCCTSAACGGCCTCGGCCTCTCGGCCTTGAGGCTAGACCTGGGTCCGGGTGGTGTGGTTCCTCTTCACTCCCACCCTGGCGCCACAGAGCTACTAATTGTGAAGAGTGGCCATATAACTGCCGGGTTCGTCTCTTCGGCGAACTCGGTTTATATAGCCACAGTTAAGACAGGAGAGCTTATGATTTTCCCTCAAGGCTTGCTGCATTTTCAGGTAGCTGCTGGAAAGAAAGGCGCCGTTGCTTTTGCTTTTTTTAGTAGCCCCAATCCTGGACTTCAGATTCTTGATTTTGCTTTGTTTGCAAGCAACTTCTCTACTCCATTGATTGCAAAGACTACTTTCCTTGACCCTGAATTGATCAAGAAGCTTAAGGGTGTTCTTGGTGGAAGCGGTTAG 630 0.5063 MLPILFLIPLLLSTTCHASVQDFCVADTTASDTPAGFPCKPEANVTSSDFVYTGLSVPGKIIXLINAAVTPAFVXQFPGLNGLGLSALRLDLGPGGVVPLHSHPGATELLIVKSGHITAGFVSSANSVYIATVKTGELMIFPQGLLHFQVAAGKKGAVAFAFFSSPNPGLQILDFALFASNFSTPLIAKTTFLDPELIKKLKGVLGGSG* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0997 209 CDD cupin_OxOx 17 205 - -
Amo19g0997 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Amo19g0997 209 Gene3D Jelly Rolls 17 208 IPR014710 -
Amo19g0997 209 Pfam Cupin 55 196 IPR006045 -
Amo19g0997 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 205 - -
Amo19g0997 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 205 - -
Amo19g0997 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Amo19g0997 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Amo19g0997 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Amo19g0997 209 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Amo19g0997 209 SMART Cupin_1_3 53 199 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0997 Amo-Chr19 16847681 16848356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0997 17 209 Miscellaneous Gene Families AT1G72610 63.212 7.19e-87 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0997 - - gmx:100500326 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0997 19 16847681 16848356 Amo19g0997 19 16847681 16848356 ECH
Amo19g0997 19 16847681 16848356 Amo09g0470 09 5871887 5872760 hybridization