Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0470 ATGAAGAGCATGACGATAATTCACGTTCTTTTCCTATTCTCATTGCTCTCATCCATTCCCCATTATTCCTATGCTTCTGTGAATGATTTCTGTGTAGCAGACCTGAAGGGACCAGATTCTCCTTCAGGCTATAACTGCAAGCCCGTTAGTGCAGTAACCGCCGATGACTTTGTGTATTCCGGCTTAGTTGCCGGAGACACCAACAACACCTTCAAAGCTGCATTGACCTCCGCATTTGTCACCGATTTTCCGGCCGTTAACGGGCTGGGAGTATCGGCGGCAAGGTTAGACATCGCGAAAGGAGGATCGATACCAATGCATACTCATCCCGGCGCCACGGAGTTACTAATCATGGTGGAAGGCGAGATAACTGCCGGGTTCATGACGCCATTCGCACTCTATTCGAAAACCTTGAAACCCGGAGATGTTTTTGTTTTCCCACAAGGGCAGTTGCACTATCAGGTGAATTCTGGTAAGAAAAAAGCCACTGCTTTTCTTGCTTTCAGTAGTGCAAACCCTGGTGCTCAGCTTCTTGATCTTCTTCTGTTTGGGAATGCCTTATCTTCTGACATTGTGGCACAAACTACCTTCCTCGATATTGACCAAGTGAAGAAGCTTAAGGCTCGTTTTGGTGGAAAAAACTTGAGTAAGCATATGTCTATGTAG 666 0.464 MKSMTIIHVLFLFSLLSSIPHYSYASVNDFCVADLKGPDSPSGYNCKPVSAVTADDFVYSGLVAGDTNNTFKAALTSAFVTDFPAVNGLGVSAARLDIAKGGSIPMHTHPGATELLIMVEGEITAGFMTPFALYSKTLKPGDVFVFPQGQLHYQVNSGKKKATAFLAFSSANPGAQLLDLLLFGNALSSDIVAQTTFLDIDQVKKLKARFGGKNLSKHMSM* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0470 221 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Amo09g0470 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 13 210 - -
Amo09g0470 221 SMART Cupin_1_3 60 204 IPR006045 -
Amo09g0470 221 Gene3D Jelly Rolls 25 214 IPR014710 -
Amo09g0470 221 CDD cupin_OxOx 27 210 - -
Amo09g0470 221 Pfam Cupin 64 203 IPR006045 -
Amo09g0470 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 210 - -
Amo09g0470 221 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Amo09g0470 221 PRINTS Germin signature 136 156 IPR001929 GO:0030145
Amo09g0470 221 PRINTS Germin signature 169 184 IPR001929 GO:0030145
Amo09g0470 221 SUPERFAMILY RmlC-like cupins 29 211 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0470 Amo-Chr9 5871887 5872760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0470 6 214 Miscellaneous Gene Families AT5G20630 55.450 8.73e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0470 - - gmx:100527498 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0997 19 16847681 16848356 Amo09g0470 09 5871887 5872760 hybridization