Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0790 ATGTCTACTCTACTCCACTCCCACTCTGCTTCTTCCTCCGCCTTCACTCTTCCCTCCCCACGTCGTCGTTCCGCTCCAATCAATCCTCTCCCTCGCTTCTCTCCCCAAAATGCCGTCAGGTGCAAGCTCATAGAGCCGTTGAAGTTCGATAATGGCAGAGCAACCAATCAAACTGACATGCTTATTGGCGGCAGCGGAACCGCCATTCCGAGTTTTCTTGTAGCGCCCAACACGCGCGTGCAGGATTTGGTCAACAAGAATGATACCCGTCTCAGAATATTCTCCGGTACTGCAAATCCTGCTCTTGCTCAGGAAATTGCGTGCTACTTGGGGCTGCAGCTGGGGAAAATTAAGATTAAGCGTTTTGCTGATGGTGAGATATATGTTCAGCTGCAAGAGAGTGTCAGAGGGTGTGATGTGTTTCTTGTGCAGCCCACATGTCCACCCGCCAATGAGAATCTTATGGAGCTACTCATAATGATTGATGCCTGCAGGAGAGCTTCAGCCAAAAATATTACTGCAGTCATTCCATATTTTGGATATGCTAGAGCTGATAGAAAGACACAAGGGCGTGAATCCATTGCAGCCAAGCTTGTAGCAAATTTAATTACTGAAGCAGGTGCAAACCGTGTTCTCGCTTGCGATCTCCATTCTGGGCAGGCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGCCAGTTATACTTGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGGTAGTTGTCTCGCCTGATGTTGGTGGTGTTGCTAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGACATGGGCATAATGTTGCTGAGGTGATGAATTTGATAGGTGATGTAAAAGGAAAGGTAGCCGTGATGGTAGATGACATGATTGATACAGCTGGAACCATTGCCAAAGGTGCAGCACTATTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCAGTACACATGCTGTTTTCAGTCCTCCTGCTATAGAAAGGTTGTCAAGCGGCTTGTTTCAAGAAGTCATCATAACGAATACAATTCCAGTGGCRGAACAGAATTATTTTCCACAGCTAACTGTCCTATCAGTGGCGAACCTTCTGGGCGAGACTGTATGGCGTGTTCATGATGACTGCTCAGGTGGAATTGAACCTTATTCCAGTCTGGGAATTGATTGA 1224 0.4616 MSTLLHSHSASSSAFTLPSPRRRSAPINPLPRFSPQNAVRCKLIEPLKFDNGRATNQTDMLIGGSGTAIPSFLVAPNTRVQDLVNKNDTRLRIFSGTANPALAQEIACYLGLQLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQAMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETVWRVHDDCSGGIEPYSSLGID* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0790 407 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 215 230 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Amo19g0790 407 TIGRFAM ribP_PPkin: ribose-phosphate diphosphokinase 92 394 IPR005946 GO:0000287|GO:0004749|GO:0009165
Amo19g0790 407 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE-RELATED 58 406 - -
Amo19g0790 407 MobiDBLite consensus disorder prediction 1 33 - -
Amo19g0790 407 CDD PRTases_typeI 250 362 IPR000836 -
Amo19g0790 407 Pfam Phosphoribosyl synthetase-associated domain 292 395 IPR005946 GO:0000287|GO:0004749|GO:0009165
Amo19g0790 407 Gene3D - 234 377 IPR029057 -
Amo19g0790 407 MobiDBLite consensus disorder prediction 1 19 - -
Amo19g0790 407 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 91 401 IPR037515 GO:0004749
Amo19g0790 407 SMART Pribosyltran_N_2 91 207 - -
Amo19g0790 407 SUPERFAMILY PRTase-like 156 392 IPR029057 -
Amo19g0790 407 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 91 207 IPR029099 -
Amo19g0790 407 Gene3D - 94 392 IPR029057 -
Amo19g0790 407 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 58 406 IPR005946 GO:0000287|GO:0004749|GO:0009165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0790 Amo-Chr19 12431939 12437725 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0790 K00948 - gmx:100816430 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0790 19 12431939 12437725 Amo02g0095 02 1090532 1095592 hybridization