LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo19g0727	ATGAAGCCTGCAGCCAAGAGAAGATCATCAACCTCCGAACCACACAACACCAACGGTGCTGCTCCTTCTGCTTCTCCTCCACTTCTTGCTGATTCTTTAACCGTTCCTGTTCCTGCTGCTGGAGAAGCTGCTAATGCTCTTGTTCATGGCGATTCTCGTGCTGATACTGTTGGCGCTGGTATCCAACCCGTTCCTCTCGCTGAGAACCAGAACATGGAGTTGCAGGTAGGGCAAGCAGAACAACAACAGCAGCGAAGAGAGGAGCTTCTTCGTGTTGAAGTTTCCGGACTGGAAGAAGAAGATGAAGAAATGGATGATGGTGATGATGATGCTGAAGAAGGTTCGTCTCGCCTTCCTGAGGGTTACTACGAAGTCGAAGCCATTCGTAAAAGGAGGGTCCGCAAGGGTGAGGTTCACTACTTGGTCAAATGGCTTGATTGGCCTGAGACAGCCAACACATGGGAGCCTCTGGAAAATCTGGAGGGTGTTTCTGAAATCGTCTCGGCTTTCGAGGAAAGCTGGCATTCAGCGCCGCAACGCAGGCGTAAGCGAAAGAATGTKGTTCAACATTCTGCGCTTAAGAAGAGGCTGGAGCGATCCGAGACTCCGTACAGCCTCAGACGATTTCCRGCTTCAACATCCACTAGCAACCATGCTCCATCAGCTCCTCCTCCTCAAATAACKGGCCTAAATTATGGTGACATCCCTGCCTTTCCACAGCCAGTGCTTTTCGCTGACGAAGTGGAAAACAACGGGGATGCTAGCATTGTCAGAAATGCTGCACCCCCAAATGGGAGTAGGCTCGGAAATGCTTCCGGATCAGTCGGTGCTGCAAATGAAGAGCCCGATTATGATCCTAAGCTTAGCGAGCTTAGAGCATCAACAGCCAATGGCTCTGATGCCGACAGGCTCGCCATACATTTCCAAGATCCTAATCCCTCGTTAGGGGATGGTCATGGAGAGGGGCAACCAAATGGTGGTTGCATGGAATCAAGCCAGGGTGGCGGCAGCAGAGGAGCCAGAAAGAGAAAATCTGGTTCTGTTAAGAGGTTTAACCGAGATTTACTCTCTGGTGAGCCTCTTAGTTTGCAGAATCCAGCTGGCACATCTGATGGCTCGGCTCAACAGGTGGTAGCCAGTAATAGGAAGGTGGATCYGCCCAGACCTTCCAACCCGATYGTAAAGATCCTAAAGCCAGTGAACTGTTTGCCGCCAATTCCAATCAGCACTCAGGATGTTGTGGTGAGCTTCTTGGCGATAAGGGCTGACGGCTCGGAGATATTGGTGGACAACCATTATCTCAAGAGGAATTATCCAATCATGCTGATCGATTTCTATGAGCAGCATCTCCGATACAGTCCTACGTCGTGA	1371	0.504	MKPAAKRRSSTSEPHNTNGAAPSASPPLLADSLTVPVPAAGEAANALVHGDSRADTVGAGIQPVPLAENQNMELQVGQAEQQQQRREELLRVEVSGLEEEDEEMDDGDDDAEEGSSRLPEGYYEVEAIRKRRVRKGEVHYLVKWLDWPETANTWEPLENLEGVSEIVSAFEESWHSAPQRRRKRKNVVQHSALKKRLERSETPYSLRRFPASTSTSNHAPSAPPPQITGLNYGDIPAFPQPVLFADEVENNGDASIVRNAAPPNGSRLGNASGSVGAANEEPDYDPKLSELRASTANGSDADRLAIHFQDPNPSLGDGHGEGQPNGGCMESSQGGGSRGARKRKSGSVKRFNRDLLSGEPLSLQNPAGTSDGSAQQVVASNRKVDXPRPSNPIVKILKPVNCLPPIPISTQDVVVSFLAIRADGSEILVDNHYLKRNYPIMLIDFYEQHLRYSPTS*	457

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo19g0727	456	ProSitePatterns	Chromo domain signature.	140	160	IPR023779	-
	Amo19g0727	456	Pfam	Chromo (CHRromatin Organisation MOdifier) domain	123	172	IPR023780	-
	Amo19g0727	456	MobiDBLite	consensus disorder prediction	254	390	-	-
	Amo19g0727	456	MobiDBLite	consensus disorder prediction	206	224	-	-
	Amo19g0727	456	ProSiteProfiles	Chromo and chromo shadow domain profile.	123	182	IPR000953	-
	Amo19g0727	456	PANTHER	CHROMO DOMAIN-CONTAINING PROTEIN LHP1	69	455	IPR044251	GO:0006325\|GO:0031507
	Amo19g0727	456	Coils	Coil	69	100	-	-
	Amo19g0727	456	MobiDBLite	consensus disorder prediction	68	83	-	-
	Amo19g0727	456	MobiDBLite	consensus disorder prediction	1	117	-	-
	Amo19g0727	456	MobiDBLite	consensus disorder prediction	94	113	-	-
	Amo19g0727	456	SMART	chromo_7	122	175	IPR000953	-
	Amo19g0727	456	MobiDBLite	consensus disorder prediction	358	380	-	-
	Amo19g0727	456	CDD	CD_CSD	123	172	-	-
	Amo19g0727	456	PANTHER	CHROMO DOMAIN-CONTAINING PROTEIN LHP1	69	455	-	-
	Amo19g0727	456	SUPERFAMILY	Chromo domain-like	117	181	IPR016197	-
	Amo19g0727	456	Gene3D	-	98	174	-	-
	Amo19g0727	456	MobiDBLite	consensus disorder prediction	199	234	-	-
	Amo19g0727	456	SMART	ChS_2	382	455	IPR008251	GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo19g0727	Amo-Chr19	11268042	11271231	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo19g0727	-		-	ahf:112732281	790.801

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo19g0727	19	11268042	11271231	Amo02g0409	02	5056467	5059599	hybridization