Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0409 ATGAAGCCTGCAGCCAAGAGAAGATCATCAACCTCCGAACCACACAACACCAACGGTGCTGCTCCTTCTGCTTCTCCTCCACTTCTTGCTGATTCTTTAACCGTTCCTGTTCCTGCTGCTGGAGAAGCTGCTAATGCTCTTGTTCATGGCGATTCTCGTGCTGATACTGTTGGCGCTGGTATCCAACCCGTTCCTCTCGCTGAGAACCAGAACATGGAGTTGCAGGTAGGGCAAGCAGAACAACAACAGCAGCGAAGAGAGGAGCTTCTTCGTGTTGAAGTTTCCGGACTGGAAGAAGAAGATGAAGAAATGGATGATGGTGATGATGATGCTGAAGAAGGTTCGTCTCGCCTTCCTGAGGGTTACTACGAAGTCGAAGCCATTCGTAAAAGGAGGGTCCGCAAGGGTGAGGTTCACTACTTGGTCAAATGGCTTGATTGGCCTGAGACAGCCAACACATGGGAGCCTCTGGAAAATCTGGAGGGTGTTTCTGAAATCGTCTCGGCTTTCGAGGAAAGCTGGCATTCAGCGCCGCAACGCAGGCGTAAGCGAAAGAATGTTGTTCAACATTCTGCGCTTAAGAAGAGGCTGGAGCGATCCGAGACTCCGTACAGCCTCAGACGATTTCCAGCTTCAACATCCACTAGCAACCATGCTCCATCAGCTCCTCCTCCTCAAATAACGGGCCTAAATTATGGTGACATCCCTGCCTTTCCACAGCCAGTGCTTTTCGCTGACGAAGTGGAAAACAACGGGGATGCTAGCATTGTCAGAAATGCTGCACCCCCAAATGTGAGTAGGCTTGGAAATGCTTCCGGGTCAGTCAGTGCTGCAAATGAAGAGCCCGATTATGATCCTAAGCTTAGCGAGCTTAGAGCATCAACAGCCAATGGCTCTGATGCTGACAGGCTTGCCATACAGTTCCAAGATCCTAATCCCTCGTCAGGGGATGGTCATGGAGAGGGGCAACCAAATGGTGGTTGCATGGAATCAAGCCAGGGTGGCGGCAGCAGAGGAGCCAGAAAGAGAAAATCTGGTTCTGTTAAGAGGTTTAACCGAGATTTACTCTCTGGTGAGCCTCTTAGTTTGCAGAATCCAGCTGGCACATCTGATGGCTCGGCTCAACAGGTGGTAGCCAGTAATAGGAAGGTGGATCTGCCCAGACCTTCCAACCCGATCGTAAAGATCCTAAAGCCAGTGAACTGTTTGCCGCCAATTCCAATCAGCACTCAGGATGTTGTGGTGAGCTTCTTGGCGATAAGGGCTGACGGCTCGGAGATATTGGTGGACAACCATTATCTCAAGAGGAATTATCCAATCATGCTGATCGATTTCTATGAGCAGCATCTCCGATACAGTCCTATGTCGTGA 1371 0.5033 MKPAAKRRSSTSEPHNTNGAAPSASPPLLADSLTVPVPAAGEAANALVHGDSRADTVGAGIQPVPLAENQNMELQVGQAEQQQQRREELLRVEVSGLEEEDEEMDDGDDDAEEGSSRLPEGYYEVEAIRKRRVRKGEVHYLVKWLDWPETANTWEPLENLEGVSEIVSAFEESWHSAPQRRRKRKNVVQHSALKKRLERSETPYSLRRFPASTSTSNHAPSAPPPQITGLNYGDIPAFPQPVLFADEVENNGDASIVRNAAPPNVSRLGNASGSVSAANEEPDYDPKLSELRASTANGSDADRLAIQFQDPNPSSGDGHGEGQPNGGCMESSQGGGSRGARKRKSGSVKRFNRDLLSGEPLSLQNPAGTSDGSAQQVVASNRKVDLPRPSNPIVKILKPVNCLPPIPISTQDVVVSFLAIRADGSEILVDNHYLKRNYPIMLIDFYEQHLRYSPMS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0409 456 Pfam Chromo (CHRromatin Organisation MOdifier) domain 123 172 IPR023780 -
Amo02g0409 456 ProSitePatterns Chromo domain signature. 140 160 IPR023779 -
Amo02g0409 456 MobiDBLite consensus disorder prediction 93 117 - -
Amo02g0409 456 MobiDBLite consensus disorder prediction 1 33 - -
Amo02g0409 456 SMART ChS_2 378 455 IPR008251 GO:0005634
Amo02g0409 456 MobiDBLite consensus disorder prediction 206 224 - -
Amo02g0409 456 ProSiteProfiles Chromo and chromo shadow domain profile. 123 182 IPR000953 -
Amo02g0409 456 Coils Coil 69 100 - -
Amo02g0409 456 MobiDBLite consensus disorder prediction 256 285 - -
Amo02g0409 456 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 69 454 IPR044251 GO:0006325|GO:0031507
Amo02g0409 456 MobiDBLite consensus disorder prediction 306 383 - -
Amo02g0409 456 MobiDBLite consensus disorder prediction 94 113 - -
Amo02g0409 456 SMART chromo_7 122 175 IPR000953 -
Amo02g0409 456 MobiDBLite consensus disorder prediction 358 380 - -
Amo02g0409 456 CDD CD_CSD 123 172 - -
Amo02g0409 456 SUPERFAMILY Chromo domain-like 117 181 IPR016197 -
Amo02g0409 456 Gene3D - 98 174 - -
Amo02g0409 456 MobiDBLite consensus disorder prediction 203 233 - -
Amo02g0409 456 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 69 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0409 Amo-Chr2 5056467 5059599 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0409 - - ahf:112732281 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0727 19 11268042 11271231 Amo02g0409 02 5056467 5059599 hybridization