Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0666 ATGAATCCCGAGTATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCTGGTGTTGGCAAATCATGTCTTCTTCTGAGATTTGCTGATGATTCATACATTGAGAGCTACATTAGCACCATCGGAGTTGATTTTAAAATACGAACTGTTGAGCAGGATGGGAAGACGATTAAACTTCAGATTTGGGATACTGCTGGACAAGAACGGTTTAGAACAATAACCAGTAGCTACTATCGTGGGGCACATGGAATCATTATTGTTTATGATGTGACAGATGAAGAGAGCTTCAATAATGTGAAGCAGTGGCTCAGTGAAATCGATCGCTATGCTAGTGACAACGTCAACAAACTCTTAGTTGGAAACAAGAGTGATCTGACAGCAAATAGAGTTGTCTCATATGAAACAGCCAAAGCATTCGCGGACGAAATAGGCATTCCTTTTATGGAAACTAGTGCAAAAGACTCTACAAATGTCGAACAAGCATTCATGGCCATGTCTGCCTCCATCAAGAATAGAATGGCGAGCCAACCAGCCGCAAACAATGCAAGGCCTCCCACGGTACAAATCAAAGGACAGCCAGTTGGACAGAAAAGTGGGTGTTGCTCTTCCTAG 612 0.4248 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTANRVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMSASIKNRMASQPAANNARPPTVQIKGQPVGQKSGCCSS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0666 203 ProSiteProfiles small GTPase Rab1 family profile. 4 203 - -
Amo19g0666 203 Gene3D - 2 197 IPR027417 -
Amo19g0666 203 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 6 202 - -
Amo19g0666 203 TIGRFAM small_GTP: small GTP-binding protein domain 7 164 IPR005225 GO:0005525
Amo19g0666 203 ProSiteProfiles small GTPase Ras family profile. 1 203 IPR001806 GO:0003924|GO:0005525
Amo19g0666 203 Pfam Ras family 10 169 IPR001806 GO:0003924|GO:0005525
Amo19g0666 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 188 IPR027417 -
Amo19g0666 203 PANTHER LD21953P-RELATED 6 202 - -
Amo19g0666 203 SMART rab_sub_5 9 172 - -
Amo19g0666 203 CDD Rab1_Ypt1 7 172 - -
Amo19g0666 203 ProSiteProfiles small GTPase Arf family profile. 2 169 - -
Amo19g0666 203 PRINTS Transforming protein P21 ras signature 9 30 - -
Amo19g0666 203 PRINTS Transforming protein P21 ras signature 32 48 - -
Amo19g0666 203 PRINTS Transforming protein P21 ras signature 50 72 - -
Amo19g0666 203 PRINTS Transforming protein P21 ras signature 112 125 - -
Amo19g0666 203 PRINTS Transforming protein P21 ras signature 147 169 - -
Amo19g0666 203 SMART ras_sub_4 6 172 - -
Amo19g0666 203 SMART rho_sub_3 11 171 IPR001806 GO:0003924|GO:0005525
Amo19g0666 203 ProSiteProfiles small GTPase Rho family profile. 2 174 - -
Amo19g0666 203 MobiDBLite consensus disorder prediction 174 203 - -
Amo19g0666 203 SMART arf_sub_2 1 173 - -
Amo19g0666 203 SMART ran_sub_2 14 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0666 Amo-Chr19 10252294 10255353 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0666 K07874 - gmx:100306147 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0666 19 10252294 10255353 Amo19g0666 19 10252294 10255353 ECH
Amo19g0666 19 10252294 10255353 Amo14g3607 14 140418853 140421942 PCT
Amo19g0666 19 10252294 10255353 Amo04g2598 04 99042943 99046032 PCT