Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3607 ATGAATCCCGAATATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCGGGTGTTGGAAAATCATGTCTTCTTCTGAGATTTGCCGATGATTCATACATTGAGAGCTACATAAGCACCATTGGAGTTGATTTTAAAATACGTACTGTTGAGCAGGATGGAAAAACCATTAAACTCCAAATTTGGGACACAGCTGGGCAAGAACGATTCAGGACAATTACCAGTAGCTACTATCGCGGGGCACATGGCATCATTATTGTTTATGATGTGACAGACGAAGAGAGCTTCAACAATGTGAAGCAGTGGCTCAGCGAAATCGACCGTTACGCCAGTGATAATGTTAACAAACTTTTGGTTGGCAACAAGTGTGATCTGACATCAAACAGAGCTGTGTCATATGAAACAGCCAAAGCATTCGCAGATGAAATAGGCATTCCTTTCATGGAAACAAGTGCAAAAGATGCTACAAATGTTGAACAGGCATTCATGGCCATGTCTGCTTCCATCAAGACCAGAATGGCAAGCCAACCTGCAAACAATGCAAGGCCTCCAACAGTGCAGATCAGAGGACAGCCAGTTCAGCAGAGCAGTGGTTGCTGCTCATCCTAA 609 0.4335 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLTSNRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKTRMASQPANNARPPTVQIRGQPVQQSSGCCSS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3607 202 SMART rab_sub_5 9 172 - -
Amo14g3607 202 SMART ran_sub_2 14 199 - -
Amo14g3607 202 MobiDBLite consensus disorder prediction 173 202 - -
Amo14g3607 202 SMART rho_sub_3 11 171 IPR001806 GO:0003924|GO:0005525
Amo14g3607 202 SMART ras_sub_4 6 172 - -
Amo14g3607 202 PANTHER LD21953P-RELATED 6 201 - -
Amo14g3607 202 ProSiteProfiles small GTPase Rab1 family profile. 4 202 - -
Amo14g3607 202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 178 IPR027417 -
Amo14g3607 202 Gene3D - 2 197 IPR027417 -
Amo14g3607 202 TIGRFAM small_GTP: small GTP-binding protein domain 7 164 IPR005225 GO:0005525
Amo14g3607 202 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 6 201 - -
Amo14g3607 202 Pfam Ras family 10 169 IPR001806 GO:0003924|GO:0005525
Amo14g3607 202 PRINTS Transforming protein P21 ras signature 9 30 - -
Amo14g3607 202 PRINTS Transforming protein P21 ras signature 32 48 - -
Amo14g3607 202 PRINTS Transforming protein P21 ras signature 50 72 - -
Amo14g3607 202 PRINTS Transforming protein P21 ras signature 112 125 - -
Amo14g3607 202 PRINTS Transforming protein P21 ras signature 147 169 - -
Amo14g3607 202 CDD Rab1_Ypt1 7 172 - -
Amo14g3607 202 ProSiteProfiles small GTPase Ras family profile. 1 202 IPR001806 GO:0003924|GO:0005525
Amo14g3607 202 ProSiteProfiles small GTPase Rho family profile. 2 174 - -
Amo14g3607 202 ProSiteProfiles small GTPase Arf family profile. 2 169 - -
Amo14g3607 202 SMART arf_sub_2 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3607 Amo-Chr14 140418853 140421942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3607 10 134 EF-hand Containing Proteins AT5G27540 25.984 3.54e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3607 K07874 - gmx:100813403 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3607 14 140418853 140421942 Amo14g3607 14 140418853 140421942 ECH
Amo14g3607 14 140418853 140421942 Amo04g2598 04 99042943 99046032 hybridization
Amo19g0666 19 10252294 10255353 Amo14g3607 14 140418853 140421942 PCT