Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0466 ATGGCTGGGATTGTTGTGGTTTTTGATTTCGACTCAACAATCATTGAGTGTGATAGTGATAATTGGGTGCTTGATGAGACTGGTTTTACTGAAAAATTCTATGAGCTTCTTCCTACCACGCTTTGGAACCCTCTCATGGATAGGATGATGGGTGAGCTTCATTCAGAAGGTAAAACAATTGAAGAAATTGTAGAAATTTTGAAGCGAACTCCATTGAATCCCCGCATTGTGCATGCTATTGAGGCAGCTTATTCCCTTGGATGTGATTTGAAGATTGTGAGTGATGCAAATATGTTCTTCATTGAGACAATTCTAAAGCATCATGGAGTGAGGAATTGTTTCTCAGAGATCATTGCAAACCCTAGCTATGTTAATGAAGAAGGGAGGCTCAGAATTTCACCTTTCCATGATTATATGAAATCTTCTCATGGATGCAGTCTTTGTCCACCAAACATGTGCAAGGGAGTGATCATAGAAAGGATCCAAAATTTGCTTTCAACAGAAGGAAAGAAGAAATTCATCTACCTTGGAGATGGAAATGGAGATTTTTGCCCTAGTTTGAAGCTCAAAGAAAATGACTATTTGATGCCAAGAAAATACTTTCCTTTAAGTGATTTAGTCTCCAAAGATTCCAACAAGATTAAGGCAGAGGTTCATGGATGGAAAGATGGGGAAGAGCTTGAAAATATTTTGGTTCATATTATCAACAAAGAAATTGAAGGAAACAAAATTAATAACAATTCTACTCCGAAAATCTCAATTGATTGCAAGTTGGGGTCAATTCCAATAATGGAAACTACTACTTATCAACCTTTGCCTAAGGCACTGCCAGTTCGTCATTAA 843 0.3737 MAGIVVVFDFDSTIIECDSDNWVLDETGFTEKFYELLPTTLWNPLMDRMMGELHSEGKTIEEIVEILKRTPLNPRIVHAIEAAYSLGCDLKIVSDANMFFIETILKHHGVRNCFSEIIANPSYVNEEGRLRISPFHDYMKSSHGCSLCPPNMCKGVIIERIQNLLSTEGKKKFIYLGDGNGDFCPSLKLKENDYLMPRKYFPLSDLVSKDSNKIKAEVHGWKDGEELENILVHIINKEIEGNKINNNSTPKISIDCKLGSIPIMETTTYQPLPKALPVRH* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0466 280 PANTHER 2,3-DIKETO-5-METHYLTHIO-1-PHOSPHOPENTANE PHOSPHATASE 1 278 - -
Amo19g0466 280 PIRSF PLP_phosphatas_PHOSPHO2 1 239 IPR016965 GO:0016791
Amo19g0466 280 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 278 IPR016965 GO:0016791
Amo19g0466 280 Pfam Putative Phosphatase 4 234 IPR016965 GO:0016791
Amo19g0466 280 SUPERFAMILY HAD-like 5 190 IPR036412 -
Amo19g0466 280 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 199 IPR006384 GO:0016791
Amo19g0466 280 Gene3D - 2 189 IPR023214 -
Amo19g0466 280 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0466 Amo-Chr19 6575978 6578282 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0466 K13248 - gmx:100306469 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0466 19 6575978 6578282 Amo09g0233 09 2687300 2690681 hybridization
Amo19g0466 19 6575978 6578282 Amo19g0462 19 6500277 6503646 PCT
Amo19g0466 19 6575978 6578282 Amo19g0466 19 6575978 6578282 PCT
Amo19g0466 19 6575978 6578282 Amo09g0233 09 2687300 2690681 PCT
Amo09g0233 09 2687300 2690681 Amo19g0466 19 6575978 6578282 PCT