Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0233 ATGTCTGGGATTATTGTGGTTTTCGACTTCGACAAAACCATTGTTGATTGTGACAGTGATAACTGGGTCATTGATGGGTTGGGTTTCACCGATTTGTTCAATCAGCTTCTTCCAACCATGCCTTGGAACACCCTCATGGATAAGTTGATGCTGGAGATGCATGCACAAGGAAAAACCATTGGGGAAATTAAAGAAGTTCTTCATAGAATTCCTATTCACCCAAGAGTAATACCTGCCATTAAAGCTGCACATGCTTTAGGGTGTGATTTGAGGATTGTGAGTGATGCTAACTTATTCTTCATTGAAACAATTTTGGAGCATTTGGGAATAAAGGAATACTTTTCAGAGATTAACACAAACCCAGGTTATGTTAGTGAAGAAGGAAGGTTGAGAATTTTGCCTTACCATGACTTTAACAAAGCCCCACATGGTTGTGCTTTGTGCCCTCCAAATATGTGCAAGGGTTTAATCATAGAGAGGATACAAGATTCACTATCCAACAATGGTGATGAGAACAAGAGGATCATATATCTTGGTGATGGAAGTGGTGATTATTGCCCAAGCTTGAGGCTTAGAGAGAGAGATTTCATGATGCCAAGGAAGAACTTTCCAGTGTGGGATTTGATCTGCAAAGACCCTTTGCTTCTTAAGGCTGAAATCCATCCATGGAGTGATGGGCAAGAACTTGAGCAAGTTTTGTTGCAATTAATCAACAAGATCAACTCTTTGGATGATGAAAGCTCTCAACAATTCATCTCGTCAGATTGCAAAATGCAGACTCTATCTGTCACTGCTCATGAGGCTTTGCCTAAAGTTCTTCCAAAGCCAACATCTCAATCTGGTGCAGTTGCCTCACCACCTCAAGCACGTGCTCAGATTCGCAACAATGGTAGAAAACTCCCTCTCCGAGTCTTGGCTGTGCTGTCTCCACGTCCTCCGCATGTGCCACGGCAACCATATCTTCACCTGCTGCCTCTCAGTTCTCAACATTGCTTAAGCACTCTAAATTCATATGTCAAATTTTAA 1026 0.4191 MSGIIVVFDFDKTIVDCDSDNWVIDGLGFTDLFNQLLPTMPWNTLMDKLMLEMHAQGKTIGEIKEVLHRIPIHPRVIPAIKAAHALGCDLRIVSDANLFFIETILEHLGIKEYFSEINTNPGYVSEEGRLRILPYHDFNKAPHGCALCPPNMCKGLIIERIQDSLSNNGDENKRIIYLGDGSGDYCPSLRLRERDFMMPRKNFPVWDLICKDPLLLKAEIHPWSDGQELEQVLLQLINKINSLDDESSQQFISSDCKMQTLSVTAHEALPKVLPKPTSQSGAVASPPQARAQIRNNGRKLPLRVLAVLSPRPPHVPRQPYLHLLPLSSQHCLSTLNSYVKF* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0233 341 Pfam Putative Phosphatase 4 237 IPR016965 GO:0016791
Amo09g0233 341 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 273 IPR016965 GO:0016791
Amo09g0233 341 Coils Coil 226 246 - -
Amo09g0233 341 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 201 IPR006384 GO:0016791
Amo09g0233 341 Gene3D - 2 190 IPR023214 -
Amo09g0233 341 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 6 189 - -
Amo09g0233 341 PANTHER INORGANIC PYROPHOSPHATASE 1 273 - -
Amo09g0233 341 SUPERFAMILY HAD-like 4 188 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0233 Amo-Chr9 2687300 2690681 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0233 K13248 - gmx:100782134 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0466 19 6575978 6578282 Amo09g0233 09 2687300 2690681 hybridization
Amo09g0233 09 2687300 2690681 Amo19g0462 19 6500277 6503646 PCT
Amo19g0466 19 6575978 6578282 Amo09g0233 09 2687300 2690681 PCT
Amo09g0233 09 2687300 2690681 Amo19g0466 19 6575978 6578282 PCT
Amo09g0233 09 2687300 2690681 Amo09g0233 09 2687300 2690681 PCT